CRISPRone

CRISPRone report for GCA_002330345.1_ASM233034v1

♦ Seq 1: NRAX01000035.1 Pseudomonas aeruginosa strain env104 NODE_35_length_68805_cov_9.02515, whole genome shotgun sequence

⇒Summary: seq-len = 68805 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26341-35007 bp Zoom in on locus 1 x14 Gene: cd09641:cas3HD Type: Type-I Location: 26341-28575 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 28626-29300 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 29297-31060 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 31072-31941 bp Gene: pfam01930:cas4 Type: Type-I Location: 31960-32592 bp Gene: cd09721:cas1 Type: universal Location: 32712-33635 bp Gene: cd09725:cas2 Type: universal Location: 33645-33935 bp CRISPR array Location: 34117-35007 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 34117-35007 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 34117-35007 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRAX01000068.1 Pseudomonas aeruginosa strain env104 NODE_68_length_21854_cov_6.69931, whole genome shotgun sequence

⇒Summary: seq-len = 21854 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10803-21652 bp Zoom in on locus 1 x16 x6 CRISPR array Location: 10803-11731 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 10803-11731 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 13002-13329 bp Num of repeats: 6 Spacers: s16-s20 CRISPR array Location: 13002-13329 bp Num of repeats: 6 Spacers: s16-s20 Gene: cd09739:cas6f Type: other Location: 13513-14076 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 14080-15108 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 15119-16102 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 16089-17393 bp Gene: COG1203:cas3 Type: Type-I Location: 17415-20681 bp Gene: cd09718:cas1 Type: universal Location: 20678-21652 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 10803-11731 bp]: array | spacers
           [Locus range 13002-13329 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NRAX01000065.1 Pseudomonas aeruginosa strain env104 NODE_65_length_24035_cov_6.72792, whole genome shotgun sequence

⇒Summary: seq-len = 24035 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22559-23967 bp Zoom in on locus 1 x24 CRISPR array Location: 22559-23967 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 22559-23967 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22559-23967 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NRAX01000079.1 Pseudomonas aeruginosa strain env104 NODE_79_length_12113_cov_9.59469, whole genome shotgun sequence

⇒Summary: seq-len = 12113 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11351-11738 bp Zoom in on locus 1 x7 CRISPR array Location: 11351-11738 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 11351-11738 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11351-11738 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: NRAX01000162.1 Pseudomonas aeruginosa strain env104 NODE_162_length_221_cov_1.34043, whole genome shotgun sequence

⇒Summary: seq-len = 221 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29-194 bp Zoom in on locus 1 x3 CRISPR array Location: 29-194 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29-194 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29-194 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)