CRISPRone

CRISPRone report for GCA_002330465.1_ASM233046v1

♦ Seq 1: NRBL01000030.1 Pseudomonas aeruginosa strain env006b NODE_30_length_63731_cov_16.1979, whole genome shotgun sequence

⇒Summary: seq-len = 63731 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62271-63378 bp Zoom in on locus 1 x19 CRISPR array Location: 62271-63378 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 62271-63378 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62271-63378 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRBL01000003.1 Pseudomonas aeruginosa strain env006b NODE_3_length_356710_cov_16.6591, whole genome shotgun sequence

⇒Summary: seq-len = 356710 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38310-48391 bp Zoom in on locus 1 x14 x12 CRISPR array Location: 38310-39118 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 38310-39118 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 39300-39863 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39867-40895 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40906-41889 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41876-43180 bp Gene: COG1203:cas3 Type: Type-I Location: 43238-46468 bp Gene: cd09718:cas1 Type: universal Location: 46465-47439 bp CRISPR array Location: 47704-48391 bp Num of repeats: 12 Spacers: s14-s24 CRISPR array Location: 47704-48391 bp Num of repeats: 12 Spacers: s14-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38310-39118 bp]: array | spacers
           [Locus range 47704-48391 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)