CRISPRone

CRISPRone report for GCA_002330595.1_ASM233059v1

♦ Seq 1: NRGA01000020.1 Pseudomonas aeruginosa strain env201 NODE_20_length_124546_cov_18.4716, whole genome shotgun sequence

⇒Summary: seq-len = 124546 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 122810-123858 bp Zoom in on locus 1 x18 CRISPR array Location: 122810-123858 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 122810-123858 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 122810-123858 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRGA01000031.1 Pseudomonas aeruginosa strain env201 NODE_31_length_70256_cov_14.463, whole genome shotgun sequence

⇒Summary: seq-len = 70256 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38298-48379 bp Zoom in on locus 1 x14 x12 CRISPR array Location: 38298-39106 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 38298-39106 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 39288-39851 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39855-40883 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40894-41877 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41864-43168 bp Gene: COG1203:cas3 Type: Type-I Location: 43226-46456 bp Gene: cd09718:cas1 Type: universal Location: 46453-47427 bp CRISPR array Location: 47692-48379 bp Num of repeats: 12 Spacers: s14-s24 CRISPR array Location: 47692-48379 bp Num of repeats: 12 Spacers: s14-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38298-39106 bp]: array | spacers
           [Locus range 47692-48379 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)