CRISPRone

CRISPRone report for GCA_002330735.1_ASM233073v1

♦ Seq 1: NRAW01000040.1 Pseudomonas aeruginosa strain env107 NODE_40_length_48471_cov_8.18646, whole genome shotgun sequence

⇒Summary: seq-len = 48471 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 387-10224 bp Zoom in on locus 1 x15 x7 CRISPR array Location: 387-1255 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 387-1255 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09718:cas1 Type: universal Location: 1515-2489 bp Gene: COG1203:cas3 Type: Type-I Location: 2486-5716 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5774-7078 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7065-8048 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8059-9087 bp Gene: cd09739:cas6f Type: other Location: 9091-9654 bp CRISPR array Location: 9837-10224 bp Num of repeats: 7 Spacers: s15-s20 CRISPR array Location: 9837-10224 bp Num of repeats: 7 Spacers: s15-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 387-1255 bp]: array | spacers
           [Locus range 9837-10224 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRAW01000005.1 Pseudomonas aeruginosa strain env107 NODE_5_length_255792_cov_8.61294, whole genome shotgun sequence

⇒Summary: seq-len = 255792 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62306-63233 bp Zoom in on locus 1 x16 CRISPR array Location: 62306-63233 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 62306-63233 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62306-63233 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)