CRISPRone

CRISPRone report for GCA_002330775.1_ASM233077v1

♦ Seq 1: NRBA01000013.1 Pseudomonas aeruginosa strain env101 NODE_13_length_230555_cov_10.2524, whole genome shotgun sequence

⇒Summary: seq-len = 230555 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 180416-192283 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 180416-181765 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 180416-181765 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 182025-182999 bp Gene: COG1203:cas3 Type: Type-I Location: 182996-186226 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 186637-187938 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 187925-188908 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 188919-189947 bp Gene: cd09739:cas6f Type: other Location: 189951-190514 bp CRISPR array Location: 190699-192283 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 190699-192283 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 180416-181765 bp]: array | spacers
           [Locus range 190699-192283 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRBA01000005.1 Pseudomonas aeruginosa strain env101 NODE_5_length_494363_cov_11.5093, whole genome shotgun sequence

⇒Summary: seq-len = 494363 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 709-1756 bp Zoom in on locus 1 x18 CRISPR array Location: 709-1756 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 709-1756 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 709-1756 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)