CRISPRone

CRISPRone report for GCA_002330815.1_ASM233081v1

♦ Seq 1: NRBC01000048.1 Pseudomonas aeruginosa strain env099 NODE_48_length_8487_cov_6.35526, whole genome shotgun sequence

⇒Summary: seq-len = 8487 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 388-1737 bp Zoom in on locus 1 x23 CRISPR array Location: 388-1737 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 388-1737 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 388-1737 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRBC01000026.1 Pseudomonas aeruginosa strain env099 NODE_26_length_65779_cov_5.29914, whole genome shotgun sequence

⇒Summary: seq-len = 65779 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 387-11006 bp Zoom in on locus 1 x18 x17 CRISPR array Location: 387-1436 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 387-1436 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09718:cas1 Type: universal Location: 1696-2670 bp Gene: COG1203:cas3 Type: Type-I Location: 2667-5897 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5955-7259 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7246-8229 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8240-9268 bp Gene: cd09739:cas6f Type: other Location: 9272-9835 bp CRISPR array Location: 10019-11006 bp Num of repeats: 17 Spacers: s18-s33 CRISPR array Location: 10019-11006 bp Num of repeats: 17 Spacers: s18-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 387-1436 bp]: array | spacers
           [Locus range 10019-11006 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)