CRISPRone

CRISPRone report for GCA_002330885.1_ASM233088v1

♦ Seq 1: NRBE01000006.1 Pseudomonas aeruginosa strain env068 NODE_6_length_429979_cov_12.319, whole genome shotgun sequence

⇒Summary: seq-len = 429979 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107550-109318 bp Zoom in on locus 1 x30 CRISPR array Location: 107550-109318 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 107550-109318 bp Num of repeats: 30 Spacers: s1-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 107550-109318 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRBE01000028.1 Pseudomonas aeruginosa strain env068 NODE_28_length_49704_cov_10.644, whole genome shotgun sequence

⇒Summary: seq-len = 49704 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1039-12069 bp Zoom in on locus 1 x13 x23 CRISPR array Location: 1039-1787 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 1039-1787 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09718:cas1 Type: universal Location: 2047-3021 bp Gene: COG1203:cas3 Type: Type-I Location: 3018-6248 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6659-7960 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7947-8930 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8941-9969 bp Gene: cd09739:cas6f Type: other Location: 9973-10536 bp CRISPR array Location: 10721-12069 bp Num of repeats: 23 Spacers: s13-s34 CRISPR array Location: 10721-12069 bp Num of repeats: 23 Spacers: s13-s34 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1039-1787 bp]: array | spacers
           [Locus range 10721-12069 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)