CRISPRone

CRISPRone report for GCA_002332035.1_ASM233203v1

♦ Seq 1: NRGH01000040.1 Pseudomonas aeruginosa strain env133 NODE_40.1_length_46109_cov_7.31033, whole genome shotgun sequence

⇒Summary: seq-len = 46109 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207-10342 bp Zoom in on locus 1 x12 x15 CRISPR array Location: 207-895 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 207-895 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09718:cas1 Type: universal Location: 1152-2126 bp Gene: COG1203:cas3 Type: Type-I Location: 2123-5353 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5411-6715 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6702-7685 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7696-8724 bp Gene: cd09739:cas6f Type: other Location: 8728-9291 bp CRISPR array Location: 9475-10342 bp Num of repeats: 15 Spacers: s12-s25 CRISPR array Location: 9475-10342 bp Num of repeats: 15 Spacers: s12-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 207-895 bp]: array | spacers
           [Locus range 9475-10342 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRGH01000004.1 Pseudomonas aeruginosa strain env133 NODE_4_length_290908_cov_8.7127, whole genome shotgun sequence

⇒Summary: seq-len = 290908 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 248064-256797 bp Zoom in on locus 1 x15 Gene: cd09641:cas3HD Type: Type-I Location: 248064-250298 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 250349-251023 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 251020-252783 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 252795-253664 bp Gene: pfam01930:cas4 Type: Type-I Location: 253683-254315 bp Gene: cd09721:cas1 Type: universal Location: 254435-255358 bp Gene: cd09725:cas2 Type: universal Location: 255368-255658 bp CRISPR array Location: 255840-256797 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 255840-256797 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 255840-256797 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NRGH01000025.1 Pseudomonas aeruginosa strain env133 NODE_25_length_83557_cov_7.41748, whole genome shotgun sequence

⇒Summary: seq-len = 83557 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207-955 bp Zoom in on locus 1 x13 CRISPR array Location: 207-955 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 207-955 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 207-955 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)