CRISPRone

CRISPRone report for GCA_002332095.1_ASM233209v1

♦ Seq 1: NRGK01000054.1 Pseudomonas aeruginosa strain env105 NODE_54_length_24064_cov_8.58165, whole genome shotgun sequence

⇒Summary: seq-len = 24064 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 99-1506 bp Zoom in on locus 1 x24 CRISPR array Location: 99-1506 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 99-1506 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 99-1506 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRGK01000041.1 Pseudomonas aeruginosa strain env105 NODE_41_length_49271_cov_8.63735, whole genome shotgun sequence

⇒Summary: seq-len = 49271 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 167-11016 bp Zoom in on locus 1 x6 x16 Gene: cd09718:cas1 Type: universal Location: 167-1141 bp Gene: COG1203:cas3 Type: Type-I Location: 1138-4404 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4426-5730 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5717-6700 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6711-7739 bp Gene: cd09739:cas6f Type: other Location: 7743-8306 bp CRISPR array Location: 8491-8817 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 8491-8817 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 10089-11016 bp Num of repeats: 16 Spacers: s6-s20 CRISPR array Location: 10089-11016 bp Num of repeats: 16 Spacers: s6-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8491-8817 bp]: array | spacers
           [Locus range 10089-11016 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NRGK01000030.1 Pseudomonas aeruginosa strain env105 NODE_30_length_74761_cov_9.55765, whole genome shotgun sequence

⇒Summary: seq-len = 74761 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73986-74373 bp Zoom in on locus 1 x7 CRISPR array Location: 73986-74373 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 73986-74373 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73986-74373 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NRGK01000034.1 Pseudomonas aeruginosa strain env105 NODE_34_length_68805_cov_12.5656, whole genome shotgun sequence

⇒Summary: seq-len = 68805 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26341-35007 bp Zoom in on locus 1 x14 Gene: cd09641:cas3HD Type: Type-I Location: 26341-28575 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 28626-29300 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 29297-31060 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 31072-31941 bp Gene: pfam01930:cas4 Type: Type-I Location: 31960-32592 bp Gene: cd09721:cas1 Type: universal Location: 32712-33635 bp Gene: cd09725:cas2 Type: universal Location: 33645-33935 bp CRISPR array Location: 34117-35007 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 34117-35007 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 34117-35007 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)