CRISPRone

CRISPRone report for GCA_002332135.1_ASM233213v1

♦ Seq 1: NRGF01000005.1 Pseudomonas aeruginosa strain env140 NODE_5_length_255304_cov_7.37276, whole genome shotgun sequence

⇒Summary: seq-len = 255304 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62227-62854 bp Zoom in on locus 1 x11 CRISPR array Location: 62227-62854 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 62227-62854 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62227-62854 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRGF01000009.1 Pseudomonas aeruginosa strain env140 NODE_9_length_186338_cov_7.02412, whole genome shotgun sequence

⇒Summary: seq-len = 186338 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38248-48628 bp Zoom in on locus 1 x14 x17 CRISPR array Location: 38248-39055 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 38248-39055 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 39238-39801 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39805-40833 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40844-41827 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41814-43118 bp Gene: COG1203:cas3 Type: Type-I Location: 43176-46406 bp Gene: cd09718:cas1 Type: universal Location: 46403-47377 bp CRISPR array Location: 47638-48628 bp Num of repeats: 17 Spacers: s14-s29 CRISPR array Location: 47638-48628 bp Num of repeats: 17 Spacers: s14-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38248-39055 bp]: array | spacers
           [Locus range 47638-48628 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NRGF01000074.1 Pseudomonas aeruginosa strain env140 NODE_74_length_488_cov_0.734072, whole genome shotgun sequence

⇒Summary: seq-len = 488 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-223 bp Zoom in on locus 1 x4 CRISPR array Location: 0-223 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-223 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-223 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)