CRISPRone

CRISPRone report for GCA_002335485.1_ASM233548v1

♦ Seq 1: BDSN01000017.1 Clostridioides difficile DNA, contig: NCKUH21_17, strain: NCKUH-21, whole genome shotgun sequence

⇒Summary: seq-len = 149687 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30828-31122 bp 2 Locus 2: 123505-126016 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 CRISPR array Location: 30828-31122 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 30828-31122 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 123505-123862 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 123505-123862 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 125726-126016 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 125726-126016 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30828-31122 bp]: array | spacers
           [Locus range 123505-123862 bp]: array | spacers
           [Locus range 125726-126016 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BDSN01000018.1 Clostridioides difficile DNA, contig: NCKUH21_18, strain: NCKUH-21, whole genome shotgun sequence

⇒Summary: seq-len = 763889 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113384-114336 bp 2 Locus 2: 422113-422207 bp 3 Locus 3: 463828-464453 bp Zoom in on locus 1 x15 Zoom in on locus 2 x2 Zoom in on locus 3 x10 CRISPR array Location: 113384-114336 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 113384-114336 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 422113-422207 bp Num of repeats: 2 Spacers: s15-s15 CRISPR array Location: 422113-422207 bp Num of repeats: 2 Spacers: s15-s15 CRISPR array Location: 463828-464453 bp Num of repeats: 10 Spacers: s16-s24 CRISPR array Location: 463828-464453 bp Num of repeats: 10 Spacers: s16-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 113384-114336 bp]: array | spacers
           [Locus range 422113-422207 bp]: array | spacers
           [Locus range 463828-464453 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BDSN01000020.1 Clostridioides difficile DNA, contig: NCKUH21_20, strain: NCKUH-21, whole genome shotgun sequence

⇒Summary: seq-len = 237442 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45139-53014 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45139-47547 bp Gene: cd09693:cas5 Type: Type-I Location: 47574-48380 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48396-49409 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49429-50904 bp Gene: pfam01881:cas6 Type: other Location: 50909-51646 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51905-53014 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BDSN01000016.1 Clostridioides difficile DNA, contig: NCKUH21_16, strain: NCKUH-21, whole genome shotgun sequence

⇒Summary: seq-len = 389826 bp; # of CRISPR array = 1; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 310167-310854 bp 2 Locus 2: 386801-389824 bp Zoom in on locus 1 x11 Zoom in on locus 2 CRISPR array Location: 310167-310854 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 310167-310854 bp Num of repeats: 11 Spacers: s1-s10 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 386801-387400 bp Gene: unk Type: unknown Location: 387568-388035 bp Gene: COG2378:WYL Type: other Location: 388140-389057 bp Gene: cas14:cas14 Type: Type-V Location: 389696-389824 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 310167-310854 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BDSN01000024.1 Clostridioides difficile DNA, contig: NCKUH21_24, strain: NCKUH-21, whole genome shotgun sequence

⇒Summary: seq-len = 141259 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113657-124706 bp Zoom in on locus 1 x23 CRISPR array Location: 113657-115141 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 113657-115141 bp Num of repeats: 23 Spacers: s1-s22 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114503-114736 bp Gene: unk Type: unknown Location: 114958-115125 bp Gene: cd09725:cas2 Type: universal Location: 115325-115591 bp Gene: cd09722:cas1 Type: universal Location: 115594-116574 bp Gene: pfam01930:cas4 Type: Type-I Location: 116577-117095 bp Gene: COG1203:cas3 Type: Type-I Location: 117143-119464 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119475-120176 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120178-121092 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 121094-122971 bp Gene: pfam01881:cas6 Type: other Location: 122977-123771 bp Gene: pfam13280:WYL Type: other Location: 123792-124706 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113657-115141 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BDSN01000026.1 Clostridioides difficile DNA, contig: NCKUH21_26, strain: NCKUH-21, whole genome shotgun sequence

⇒Summary: seq-len = 367967 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 70094-76626 bp Zoom in on locus 1 x10 CRISPR array Location: 70094-70716 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 70094-70716 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70969-72954 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72965-74035 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 74056-75222 bp Gene: pfam01881:cas6 Type: other Location: 75224-75988 bp Gene: cd09693:cas5 Type: Type-I Location: 75979-76626 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 70094-70716 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)