CRISPRone

CRISPRone report for GCA_002338845.1_ASM233884v1

♦ Seq 1: DDJF01000025.1 TPA_asm: Pseudomonas aeruginosa isolate UBA1831 UBA1831_contig_7, whole genome shotgun sequence

⇒Summary: seq-len = 862515 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 633727-634475 bp Zoom in on locus 1 x13 CRISPR array Location: 633727-634475 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 633727-634475 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 633727-634475 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: DDJF01000027.1 TPA_asm: Pseudomonas aeruginosa isolate UBA1831 UBA1831_contig_144, whole genome shotgun sequence

⇒Summary: seq-len = 74083 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27108-36591 bp Zoom in on locus 1 x9 x7 CRISPR array Location: 27108-27616 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 27108-27616 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09718:cas1 Type: universal Location: 27880-28854 bp Gene: COG1203:cas3 Type: Type-I Location: 28851-32081 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 32139-33443 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 33430-34413 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 34424-35452 bp Gene: cd09739:cas6f Type: other Location: 35456-36019 bp CRISPR array Location: 36204-36591 bp Num of repeats: 7 Spacers: s9-s14 CRISPR array Location: 36204-36591 bp Num of repeats: 7 Spacers: s9-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 27108-27616 bp]: array | spacers
           [Locus range 36204-36591 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)