CRISPRone

CRISPRone report for GCA_002351425.1_ASM235142v1

♦ Seq 1: NWBW01000016.1 Pseudomonas aeruginosa strain ICBSVIM-2 NL28_S28_L001_R1_001__paired__contig_16, whole genome shotgun sequence

⇒Summary: seq-len = 49585 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37991-49509 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 37991-39336 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 37991-39336 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 39520-40083 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40087-41115 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41126-42109 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42096-43400 bp Gene: COG1203:cas3 Type: Type-I Location: 43458-46688 bp Gene: cd09718:cas1 Type: universal Location: 46685-47659 bp CRISPR array Location: 47921-49509 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 47921-49509 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37991-39336 bp]: array | spacers
           [Locus range 47921-49509 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NWBW01000053.1 Pseudomonas aeruginosa strain ICBSVIM-2 NL28_S28_L001_R1_001__paired__contig_53, whole genome shotgun sequence

⇒Summary: seq-len = 119982 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98141-106402 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 98141-99751 bp Gene: pfam13280:WYL Type: other Location: 99912-100928 bp Gene: COG2378:WYL Type: other Location: 101670-102512 bp Gene: unk Type: unknown Location: 102643-102930 bp Gene: unk Type: unknown Location: 103065-103643 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 104036-106402 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NWBW01000020.1 Pseudomonas aeruginosa strain ICBSVIM-2 NL28_S28_L001_R1_001__paired__contig_20, whole genome shotgun sequence

⇒Summary: seq-len = 132025 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 85708-91180 bp Zoom in on locus 1 Gene: cd09708:DinG Type: Subtype-IV-A Location: 85708-87882 bp Gene: mkCas0159:csf5gr6 Type: Subtype-IV-A Location: 87971-88696 bp Gene: cd09705:csf1gr8 Type: Subtype-IV-A Location: 88725-89480 bp Gene: cd09706:csf2gr7 Type: Subtype-IV-A Location: 89480-90523 bp Gene: cd09707:csf3gr5 Type: Subtype-IV-A Location: 90530-91180 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NWBW01000005.1 Pseudomonas aeruginosa strain ICBSVIM-2 NL28_S28_L001_R1_001__paired__contig_5, whole genome shotgun sequence

⇒Summary: seq-len = 432586 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 431583-432510 bp Zoom in on locus 1 x16 CRISPR array Location: 431583-432510 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 431583-432510 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 431583-432510 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)