CRISPRone

CRISPRone report for GCA_002351435.1_ASM235143v1

♦ Seq 1: NWBV01000232.1 Pseudomonas aeruginosa strain ICBBVIM-2 NL27_S27_L001_R1_001__paired__contig_232, whole genome shotgun sequence

⇒Summary: seq-len = 1159 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1160 bp Zoom in on locus 1 x20 CRISPR array Location: 0-1160 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 0-1160 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1160 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NWBV01000010.1 Pseudomonas aeruginosa strain ICBBVIM-2 NL27_S27_L001_R1_001__paired__contig_10, whole genome shotgun sequence

⇒Summary: seq-len = 47738 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 154-9822 bp Zoom in on locus 1 x23 Gene: cd09718:cas1 Type: universal Location: 154-1128 bp Gene: COG1203:cas3 Type: Type-I Location: 1125-4355 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4413-5717 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5704-6687 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6698-7726 bp Gene: cd09739:cas6f Type: other Location: 7730-8293 bp CRISPR array Location: 8478-9822 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 8478-9822 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8478-9822 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NWBV01000014.1 Pseudomonas aeruginosa strain ICBBVIM-2 NL27_S27_L001_R1_001__paired__contig_14, whole genome shotgun sequence

⇒Summary: seq-len = 247065 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98610-99537 bp Zoom in on locus 1 x16 CRISPR array Location: 98610-99537 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 98610-99537 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 98610-99537 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NWBV01000023.1 Pseudomonas aeruginosa strain ICBBVIM-2 NL27_S27_L001_R1_001__paired__contig_23, whole genome shotgun sequence

⇒Summary: seq-len = 76515 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54675-62936 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 54675-56285 bp Gene: pfam13280:WYL Type: other Location: 56446-57462 bp Gene: COG2378:WYL Type: other Location: 58204-59046 bp Gene: unk Type: unknown Location: 59096-59464 bp Gene: unk Type: unknown Location: 59530-60177 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 60570-62936 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: NWBV01000032.1 Pseudomonas aeruginosa strain ICBBVIM-2 NL27_S27_L001_R1_001__paired__contig_32, whole genome shotgun sequence

⇒Summary: seq-len = 129667 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 119542-125014 bp Zoom in on locus 1 Gene: cd09708:DinG Type: Subtype-IV-A Location: 119542-121716 bp Gene: mkCas0159:csf5gr6 Type: Subtype-IV-A Location: 121805-122530 bp Gene: cd09705:csf1gr8 Type: Subtype-IV-A Location: 122559-123314 bp Gene: cd09706:csf2gr7 Type: Subtype-IV-A Location: 123314-124357 bp Gene: cd09707:csf3gr5 Type: Subtype-IV-A Location: 124364-125014 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)