CRISPRone

CRISPRone report for GCA_002379565.1_ASM237956v1

♦ Seq 1: DFUD01000009.1 TPA_asm: Pseudomonas aeruginosa isolate UBA4195 UBA4195_contig_296, whole genome shotgun sequence

⇒Summary: seq-len = 47321 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 286-9829 bp Zoom in on locus 1 x9 x8 CRISPR array Location: 286-794 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 286-794 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09718:cas1 Type: universal Location: 1058-2032 bp Gene: COG1203:cas3 Type: Type-I Location: 2029-5259 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5317-6621 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6608-7591 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7602-8630 bp Gene: cd09739:cas6f Type: other Location: 8634-9197 bp CRISPR array Location: 9382-9829 bp Num of repeats: 8 Spacers: s9-s15 CRISPR array Location: 9382-9829 bp Num of repeats: 8 Spacers: s9-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 286-794 bp]: array | spacers
           [Locus range 9382-9829 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: DFUD01000001.1 TPA_asm: Pseudomonas aeruginosa isolate UBA4195 UBA4195_contig_44, whole genome shotgun sequence

⇒Summary: seq-len = 229075 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 228042-228789 bp Zoom in on locus 1 x13 CRISPR array Location: 228042-228789 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 228042-228789 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 228042-228789 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)