CRISPRone

CRISPRone report for GCA_002411915.1_ASM241191v1

♦ Seq 1: NXHS01000047.1 Pseudomonas aeruginosa strain 85 NODE_47_length_47150_cov_48.751, whole genome shotgun sequence

⇒Summary: seq-len = 47150 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8467-18982 bp Zoom in on locus 1 x12 x10 CRISPR array Location: 8467-9169 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 8467-9169 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 9944-12625 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12628-14196 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 14193-14723 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 14733-15875 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15877-16539 bp Gene: pfam08798:cas6e Type: other Location: 16514-17125 bp Gene: cd09719:cas1 Type: universal Location: 17152-18042 bp Gene: pfam09707:cas2 Type: universal Location: 18039-18338 bp CRISPR array Location: 18403-18982 bp Num of repeats: 10 Spacers: s12-s20 CRISPR array Location: 18403-18982 bp Num of repeats: 10 Spacers: s12-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8467-9169 bp]: array | spacers
           [Locus range 18403-18982 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)