CRISPRone

CRISPRone report for GCA_002724075.1_P._aeruginosa_F34365

♦ Seq 1: JPDZ01000001.1 Pseudomonas aeruginosa strain F34365 contig1, whole genome shotgun sequence

⇒Summary: seq-len = 3980214 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1538425-1538754 bp 2 Locus 2: 2886597-2896546 bp Zoom in on locus 1 x6 Zoom in on locus 2 x16 x8 CRISPR array Location: 1538425-1538754 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1538425-1538754 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2886597-2887525 bp Num of repeats: 16 Spacers: s6-s20 CRISPR array Location: 2886597-2887525 bp Num of repeats: 16 Spacers: s6-s20 Gene: cd09739:cas6f Type: other Location: 2887708-2888271 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2888275-2889303 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2889314-2890297 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2890284-2891588 bp Gene: COG1203:cas3 Type: Type-I Location: 2891646-2894876 bp Gene: cd09718:cas1 Type: universal Location: 2894873-2895847 bp CRISPR array Location: 2896099-2896546 bp Num of repeats: 8 Spacers: s21-s27 CRISPR array Location: 2896099-2896546 bp Num of repeats: 8 Spacers: s21-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1538425-1538754 bp]: array | spacers
           [Locus range 2886597-2887525 bp]: array | spacers
           [Locus range 2896099-2896546 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)