CRISPRone

CRISPRone report for GCA_002810995.1_Bfra_CL04T03C20_v1

♦ Seq 1: PDCU01000006.1 Bacteroides fragilis strain CL04T03C20 contig0006, whole genome shotgun sequence

⇒Summary: seq-len = 418200 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 408547-417307 bp Zoom in on locus 1 x27 Gene: cd09643:cas9 Type: Subtype-II-C Location: 408547-412857 bp Gene: unk Type: unknown Location: 412873-413397 bp Gene: unk Type: unknown Location: 413464-413772 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 413892-414824 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 414828-415160 bp CRISPR array Location: 415269-417307 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 415269-417307 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 415269-417307 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: PDCU01000005.1 Bacteroides fragilis strain CL04T03C20 contig0005, whole genome shotgun sequence

⇒Summary: seq-len = 476656 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 272578-274894 bp Zoom in on locus 1 x9 CRISPR array Location: 272578-273120 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 272578-273120 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 273333-273596 bp Gene: cd09722:cas1 Type: universal Location: 273599-273838 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 273831-274211 bp Gene: cd09652:cas6 Type: other Location: 274223-274894 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 272578-273120 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: PDCU01000003.1 Bacteroides fragilis strain CL04T03C20 contig0003, whole genome shotgun sequence

⇒Summary: seq-len = 553766 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 420609-424222 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 420609-421508 bp Gene: unk Type: unknown Location: 421505-422770 bp Gene: unk Type: unknown Location: 422778-423551 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 423554-424222 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)