CRISPRone

CRISPRone report for GCA_002811025.1_Bfra_1284_v1

♦ Seq 1: PDCX01000005.1 Bacteroides fragilis strain 1284 contig0005, whole genome shotgun sequence

⇒Summary: seq-len = 266439 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 115206-129599 bp Zoom in on locus 1 x12 CRISPR array Location: 115206-116007 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 115206-116007 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09725:cas2 Type: universal Location: 116455-116745 bp Gene: cd09634:cas1 Type: universal Location: 116739-119009 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 119029-119973 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 119976-120386 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 120399-121238 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 121258-122397 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 122390-124192 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 124197-125570 bp Gene: unk Type: unknown Location: 125584-126063 bp Gene: cash17:cash17 Type: Type- Location: 126060-127487 bp Gene: unk Type: unknown Location: 127532-128311 bp Gene: unk Type: unknown Location: 128287-128913 bp Gene: cls000004:cas6 Type: other Location: 128931-129599 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 115206-116007 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: PDCX01000015.1 Bacteroides fragilis strain 1284 contig0015, whole genome shotgun sequence

⇒Summary: seq-len = 145095 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 119871-122188 bp Zoom in on locus 1 x9 Gene: cd09652:cas6 Type: other Location: 119871-120542 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 120554-120934 bp Gene: cd09722:cas1 Type: universal Location: 120927-121166 bp Gene: cd09725:cas2 Type: universal Location: 121169-121432 bp CRISPR array Location: 121645-122188 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 121645-122188 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 121645-122188 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: PDCX01000001.1 Bacteroides fragilis strain 1284 contig0001, whole genome shotgun sequence

⇒Summary: seq-len = 572068 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190017-193630 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 190017-190685 bp Gene: unk Type: unknown Location: 190688-191461 bp Gene: unk Type: unknown Location: 191469-192734 bp Gene: pfam13280:WYL Type: other Location: 192731-193630 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)