CRISPRone

CRISPRone report for GCA_002812585.1_ASM281258v1

♦ Seq 1: CP025044.1 Clostridioides difficile strain R0104a chromosome

⇒Summary: seq-len = 4190038 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1194845-1195799 bp 2 Locus 2: 1404187-1404874 bp 3 Locus 3: 1480821-1484834 bp 4 Locus 4: 1515559-1515853 bp 5 Locus 5: 1608236-1610747 bp 6 Locus 6: 1748023-1749108 bp 7 Locus 7: 2056885-2056979 bp 8 Locus 8: 2098600-2099225 bp 9 Locus 9: 2559473-2567348 bp 10 Locus 10: 3170817-3181866 bp 11 Locus 11: 3417638-3424170 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x17 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x23 Zoom in on locus 11 x10 CRISPR array Location: 1194845-1195799 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1194845-1195799 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1404187-1404874 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1404187-1404874 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1480821-1481420 bp Gene: unk Type: unknown Location: 1481588-1482055 bp Gene: COG2378:WYL Type: other Location: 1482160-1483077 bp Gene: cas14:cas14 Type: Type-V Location: 1483716-1484834 bp CRISPR array Location: 1515559-1515853 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1515559-1515853 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1608236-1608593 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1608236-1608593 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1610457-1610747 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1610457-1610747 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1748023-1749108 bp Num of repeats: 17 Spacers: s38-s53 CRISPR array Location: 1748023-1749108 bp Num of repeats: 17 Spacers: s38-s53 CRISPR array Location: 2056885-2056979 bp Num of repeats: 2 Spacers: s54-s54 CRISPR array Location: 2056885-2056979 bp Num of repeats: 2 Spacers: s54-s54 CRISPR array Location: 2098600-2099225 bp Num of repeats: 10 Spacers: s55-s63 CRISPR array Location: 2098600-2099225 bp Num of repeats: 10 Spacers: s55-s63 Gene: cd09641:cas3HD Type: Type-I Location: 2559473-2561881 bp Gene: cd09693:cas5 Type: Type-I Location: 2561908-2562714 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2562730-2563743 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2563763-2565238 bp Gene: pfam01881:cas6 Type: other Location: 2565243-2565980 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2566239-2567348 bp CRISPR array Location: 3170817-3172301 bp Num of repeats: 23 Spacers: s64-s85 CRISPR array Location: 3170817-3172301 bp Num of repeats: 23 Spacers: s64-s85 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3171663-3171896 bp Gene: unk Type: unknown Location: 3172118-3172285 bp Gene: cd09725:cas2 Type: universal Location: 3172485-3172751 bp Gene: cd09722:cas1 Type: universal Location: 3172754-3173734 bp Gene: pfam01930:cas4 Type: Type-I Location: 3173737-3174255 bp Gene: COG1203:cas3 Type: Type-I Location: 3174303-3176624 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3176635-3177336 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3177338-3178252 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3178254-3180131 bp Gene: pfam01881:cas6 Type: other Location: 3180137-3180931 bp Gene: pfam13280:WYL Type: other Location: 3180952-3181866 bp CRISPR array Location: 3417638-3418260 bp Num of repeats: 10 Spacers: s86-s94 CRISPR array Location: 3417638-3418260 bp Num of repeats: 10 Spacers: s86-s94 Gene: COG1203:cas3 Type: Type-I Location: 3418513-3420498 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3420509-3421579 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3421600-3422766 bp Gene: pfam01881:cas6 Type: other Location: 3422768-3423532 bp Gene: cd09693:cas5 Type: Type-I Location: 3423523-3424170 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1194845-1195799 bp]: array | spacers
           [Locus range 1404187-1404874 bp]: array | spacers
           [Locus range 1515559-1515853 bp]: array | spacers
           [Locus range 1608236-1608593 bp]: array | spacers
           [Locus range 1610457-1610747 bp]: array | spacers
           [Locus range 1748023-1749108 bp]: array | spacers
           [Locus range 2056885-2056979 bp]: array | spacers
           [Locus range 2098600-2099225 bp]: array | spacers
           [Locus range 3170817-3172301 bp]: array | spacers
           [Locus range 3417638-3418260 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)