CRISPRone

CRISPRone report for GCA_002812605.1_ASM281260v1

♦ Seq 1: CP025045.1 Clostridioides difficile strain W0023a chromosome

⇒Summary: seq-len = 4110080 bp; # of CRISPR array = 9; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1217575-1217934 bp 2 Locus 2: 1426048-1426343 bp 3 Locus 3: 1536667-1537227 bp 4 Locus 4: 1712632-1713782 bp 5 Locus 5: 2031651-2031810 bp 6 Locus 6: 2082723-2083670 bp 7 Locus 7: 2432810-2433824 bp 8 Locus 8: 2619898-2627763 bp 9 Locus 9: 2701031-2701588 bp 10 Locus 10: 3205103-3216338 bp Zoom in on locus 1 x6 Zoom in on locus 2 x5 Zoom in on locus 3 x9 Zoom in on locus 4 x18 Zoom in on locus 5 x3 Zoom in on locus 6 x15 Zoom in on locus 7 x16 Zoom in on locus 8 Zoom in on locus 9 x9 Zoom in on locus 10 x26 CRISPR array Location: 1217575-1217934 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1217575-1217934 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1426048-1426343 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 1426048-1426343 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 1536667-1537227 bp Num of repeats: 9 Spacers: s10-s17 CRISPR array Location: 1536667-1537227 bp Num of repeats: 9 Spacers: s10-s17 CRISPR array Location: 1712632-1713782 bp Num of repeats: 18 Spacers: s18-s34 CRISPR array Location: 1712632-1713782 bp Num of repeats: 18 Spacers: s18-s34 CRISPR array Location: 2031651-2031810 bp Num of repeats: 3 Spacers: s35-s36 CRISPR array Location: 2031651-2031810 bp Num of repeats: 3 Spacers: s35-s36 CRISPR array Location: 2082723-2083670 bp Num of repeats: 15 Spacers: s37-s50 CRISPR array Location: 2082723-2083670 bp Num of repeats: 15 Spacers: s37-s50 CRISPR array Location: 2432810-2433824 bp Num of repeats: 16 Spacers: s51-s65 CRISPR array Location: 2432810-2433824 bp Num of repeats: 16 Spacers: s51-s65 Gene: cd09641:cas3HD Type: Type-I Location: 2619898-2622306 bp Gene: cd09693:cas5 Type: Type-I Location: 2622333-2623130 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2623146-2624159 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2624179-2625654 bp Gene: pfam01881:cas6 Type: other Location: 2625659-2626396 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2626654-2627763 bp CRISPR array Location: 2701031-2701588 bp Num of repeats: 9 Spacers: s66-s73 CRISPR array Location: 2701031-2701588 bp Num of repeats: 9 Spacers: s66-s73 CRISPR array Location: 3205103-3206773 bp Num of repeats: 26 Spacers: s74-s98 CRISPR array Location: 3205103-3206773 bp Num of repeats: 26 Spacers: s74-s98 Gene: cd09725:cas2 Type: universal Location: 3206957-3207223 bp Gene: cd09722:cas1 Type: universal Location: 3207226-3208206 bp Gene: pfam01930:cas4 Type: Type-I Location: 3208209-3208727 bp Gene: COG1203:cas3 Type: Type-I Location: 3208775-3211096 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3211107-3211808 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3211810-3212724 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3212726-3214603 bp Gene: pfam01881:cas6 Type: other Location: 3214609-3215403 bp Gene: pfam13280:WYL Type: other Location: 3215424-3216338 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1217575-1217934 bp]: array | spacers
           [Locus range 1426048-1426343 bp]: array | spacers
           [Locus range 1536667-1537227 bp]: array | spacers
           [Locus range 1712632-1713782 bp]: array | spacers
           [Locus range 2031651-2031810 bp]: array | spacers
           [Locus range 2082723-2083670 bp]: array | spacers
           [Locus range 2432810-2433824 bp]: array | spacers
           [Locus range 2701031-2701588 bp]: array | spacers
           [Locus range 3205103-3206773 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)