CRISPRone

CRISPRone report for GCA_002812625.1_ASM281262v1

♦ Seq 1: CP025046.1 Clostridioides difficile strain W0022a chromosome

⇒Summary: seq-len = 4188456 bp; # of CRISPR array = 8; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1428596-1429155 bp 2 Locus 2: 1539447-1540204 bp 3 Locus 3: 1716952-1718102 bp 4 Locus 4: 2034802-2034962 bp 5 Locus 5: 2416115-2416731 bp 6 Locus 6: 2580002-2588323 bp 7 Locus 7: 2661606-2661963 bp 8 Locus 8: 3196133-3207204 bp 9 Locus 9: 3429444-3429537 bp Zoom in on locus 1 x9 Zoom in on locus 2 x12 Zoom in on locus 3 x18 Zoom in on locus 4 x3 Zoom in on locus 5 x10 Zoom in on locus 6 Zoom in on locus 7 x6 Zoom in on locus 8 x24 Zoom in on locus 9 x2 CRISPR array Location: 1428596-1429155 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1428596-1429155 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1539447-1540204 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 1539447-1540204 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 1716952-1718102 bp Num of repeats: 18 Spacers: s20-s36 CRISPR array Location: 1716952-1718102 bp Num of repeats: 18 Spacers: s20-s36 CRISPR array Location: 2034802-2034962 bp Num of repeats: 3 Spacers: s37-s38 CRISPR array Location: 2034802-2034962 bp Num of repeats: 3 Spacers: s37-s38 CRISPR array Location: 2416115-2416731 bp Num of repeats: 10 Spacers: s39-s47 CRISPR array Location: 2416115-2416731 bp Num of repeats: 10 Spacers: s39-s47 Gene: cd09641:cas3HD Type: Type-I Location: 2580002-2582410 bp Gene: cd09693:cas5 Type: Type-I Location: 2582437-2583234 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2583250-2584266 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2584286-2585761 bp Gene: pfam01881:cas6 Type: other Location: 2585766-2586503 bp Gene: unk Type: unknown Location: 2586604-2586780 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2587214-2588323 bp CRISPR array Location: 2661606-2661963 bp Num of repeats: 6 Spacers: s48-s52 CRISPR array Location: 2661606-2661963 bp Num of repeats: 6 Spacers: s48-s52 CRISPR array Location: 3196133-3197666 bp Num of repeats: 24 Spacers: s53-s75 CRISPR array Location: 3196133-3197666 bp Num of repeats: 24 Spacers: s53-s75 Gene: cd09725:cas2 Type: universal Location: 3197850-3198116 bp Gene: cd09722:cas1 Type: universal Location: 3198119-3199099 bp Gene: pfam01930:cas4 Type: Type-I Location: 3199102-3199620 bp Gene: COG1203:cas3 Type: Type-I Location: 3199668-3201989 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3202000-3202701 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3202703-3203617 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3203619-3205469 bp Gene: pfam01881:cas6 Type: other Location: 3205475-3206269 bp Gene: pfam13280:WYL Type: other Location: 3206290-3207204 bp CRISPR array Location: 3429444-3429537 bp Num of repeats: 2 Spacers: s76-s76 CRISPR array Location: 3429444-3429537 bp Num of repeats: 2 Spacers: s76-s76 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1428596-1429155 bp]: array | spacers
           [Locus range 1539447-1540204 bp]: array | spacers
           [Locus range 1716952-1718102 bp]: array | spacers
           [Locus range 2034802-2034962 bp]: array | spacers
           [Locus range 2416115-2416731 bp]: array | spacers
           [Locus range 2661606-2661963 bp]: array | spacers
           [Locus range 3196133-3197666 bp]: array | spacers
           [Locus range 3429444-3429537 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)