CRISPRone

CRISPRone report for GCA_002812645.1_ASM281264v1

♦ Seq 1: CP025047.1 Clostridioides difficile strain W0003a chromosome

⇒Summary: seq-len = 4075361 bp; # of CRISPR array = 8; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1210173-1210466 bp 2 Locus 2: 1418608-1419029 bp 3 Locus 3: 1529323-1529550 bp 4 Locus 4: 1704917-1705278 bp 5 Locus 5: 2023151-2023312 bp 6 Locus 6: 2215414-2227470 bp 7 Locus 7: 2416973-2417723 bp 8 Locus 8: 2579710-2587575 bp 9 Locus 9: 2660823-2661380 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 Zoom in on locus 3 x4 Zoom in on locus 4 x6 Zoom in on locus 5 x3 Zoom in on locus 6 x46 Zoom in on locus 7 x12 Zoom in on locus 8 Zoom in on locus 9 x9 CRISPR array Location: 1210173-1210466 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1210173-1210466 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1418608-1419029 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 1418608-1419029 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 1529323-1529550 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 1529323-1529550 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 1704917-1705278 bp Num of repeats: 6 Spacers: s14-s18 CRISPR array Location: 1704917-1705278 bp Num of repeats: 6 Spacers: s14-s18 CRISPR array Location: 2023151-2023312 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 2023151-2023312 bp Num of repeats: 3 Spacers: s19-s20 Gene: cd09725:cas2 Type: universal Location: 2215414-2215704 bp Gene: cd09722:cas1 Type: universal Location: 2215915-2216922 bp Gene: pfam01930:cas4 Type: Type-I Location: 2216948-2217442 bp CRISPR array Location: 2217527-2220528 bp Num of repeats: 46 Spacers: s21-s65 CRISPR array Location: 2217527-2220528 bp Num of repeats: 46 Spacers: s21-s65 Gene: cd09641:cas3HD Type: Type-I Location: 2220718-2223276 bp Gene: cd09693:cas5 Type: Type-I Location: 2223300-2224040 bp Gene: pfam05107:cas7b Type: Type-I Location: 2224042-2225031 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2225024-2226763 bp Gene: cd09652:cas6 Type: other Location: 2226775-2227470 bp CRISPR array Location: 2416973-2417723 bp Num of repeats: 12 Spacers: s66-s76 CRISPR array Location: 2416973-2417723 bp Num of repeats: 12 Spacers: s66-s76 Gene: cd09641:cas3HD Type: Type-I Location: 2579710-2582118 bp Gene: cd09693:cas5 Type: Type-I Location: 2582145-2582942 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2582958-2583971 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2583991-2585466 bp Gene: pfam01881:cas6 Type: other Location: 2585471-2586208 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2586466-2587575 bp CRISPR array Location: 2660823-2661380 bp Num of repeats: 9 Spacers: s77-s84 CRISPR array Location: 2660823-2661380 bp Num of repeats: 9 Spacers: s77-s84 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1210173-1210466 bp]: array | spacers
           [Locus range 1418608-1419029 bp]: array | spacers
           [Locus range 1529323-1529550 bp]: array | spacers
           [Locus range 1704917-1705278 bp]: array | spacers
           [Locus range 2023151-2023312 bp]: array | spacers
           [Locus range 2217527-2220528 bp]: array | spacers
           [Locus range 2416973-2417723 bp]: array | spacers
           [Locus range 2660823-2661380 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)