CRISPRone

CRISPRone report for GCA_002866685.1_ASM286668v1

♦ Seq 1: NIZR01000006.1 Pseudomonas aeruginosa strain PA5 NODE_6_length_283648_cov_22.5474, whole genome shotgun sequence

⇒Summary: seq-len = 283648 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192339-192787 bp Zoom in on locus 1 x8 CRISPR array Location: 192339-192787 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 192339-192787 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 192339-192787 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NIZR01000040.1 Pseudomonas aeruginosa strain PA5 NODE_40_length_48476_cov_17.9696, whole genome shotgun sequence

⇒Summary: seq-len = 48476 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37227-48136 bp Zoom in on locus 1 x17 x23 CRISPR array Location: 37227-38215 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 37227-38215 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09739:cas6f Type: other Location: 38398-38961 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38965-39993 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40004-40987 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40974-42278 bp Gene: COG1203:cas3 Type: Type-I Location: 42336-45566 bp Gene: cd09718:cas1 Type: universal Location: 45563-46537 bp CRISPR array Location: 46789-48136 bp Num of repeats: 23 Spacers: s17-s38 CRISPR array Location: 46789-48136 bp Num of repeats: 23 Spacers: s17-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37227-38215 bp]: array | spacers
           [Locus range 46789-48136 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NIZR01000038.1 Pseudomonas aeruginosa strain PA5 NODE_38_length_49827_cov_33.3592, whole genome shotgun sequence

⇒Summary: seq-len = 49827 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35626-45487 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 35626-37992 bp Gene: unk Type: unknown Location: 38385-39032 bp Gene: unk Type: unknown Location: 39098-39466 bp Gene: pfam13280:WYL Type: other Location: 39516-40391 bp Gene: unk Type: unknown Location: 40406-40939 bp Gene: unk Type: unknown Location: 41198-41428 bp Gene: unk Type: unknown Location: 41497-41736 bp Gene: pfam13280:WYL Type: other Location: 42700-43716 bp Gene: mkCas0115:csx3 Type: other Location: 43775-45487 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)