CRISPRone

CRISPRone report for GCA_002866785.1_ASM286678v1

♦ Seq 1: NIZP01000005.1 Pseudomonas aeruginosa strain PA3 NODE_5_length_195697_cov_9.48143, whole genome shotgun sequence

⇒Summary: seq-len = 195697 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39022-39110 bp Zoom in on locus 1 x2 CRISPR array Location: 39022-39110 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 39022-39110 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 39022-39110 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NIZP01000023.1 Pseudomonas aeruginosa strain PA3 NODE_23_length_90892_cov_12.2969, whole genome shotgun sequence

⇒Summary: seq-len = 90892 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9731-22821 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 9731-10036 bp Gene: unk Type: unknown Location: 10572-10805 bp Gene: cd09641:cas3HD Type: Type-I Location: 10978-12837 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 22519-22821 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NIZP01000004.1 Pseudomonas aeruginosa strain PA3 NODE_4_length_217199_cov_9.31277, whole genome shotgun sequence

⇒Summary: seq-len = 217199 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60508-70491 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 60508-61416 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 61429-64662 bp Gene: unk Type: unknown Location: 64659-65462 bp Gene: unk Type: unknown Location: 65474-67474 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 67486-70491 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NIZP01000050.1 Pseudomonas aeruginosa strain PA3 NODE_50_length_47939_cov_6.65152, whole genome shotgun sequence

⇒Summary: seq-len = 47912 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38165-47713 bp Zoom in on locus 1 x21 CRISPR array Location: 38165-39390 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 38165-39390 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09739:cas6f Type: other Location: 39574-40137 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40141-41169 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41180-42163 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42150-43454 bp Gene: COG1203:cas3 Type: Type-I Location: 43512-46742 bp Gene: cd09718:cas1 Type: universal Location: 46739-47713 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38165-39390 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: NIZP01000035.1 Pseudomonas aeruginosa strain PA3 NODE_35_length_62868_cov_8.49345, whole genome shotgun sequence

⇒Summary: seq-len = 62868 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62290-62737 bp Zoom in on locus 1 x8 CRISPR array Location: 62290-62737 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 62290-62737 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62290-62737 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: NIZP01000131.1 Pseudomonas aeruginosa strain PA3 NODE_131_length_1584_cov_10.2336, whole genome shotgun sequence

⇒Summary: seq-len = 1584 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132-1481 bp Zoom in on locus 1 x23 CRISPR array Location: 132-1481 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 132-1481 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 132-1481 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)