CRISPRone

CRISPRone report for GCA_002915235.1_ASM291523v1

♦ Seq 1: PQBU01000009.1 Pseudomonas aeruginosa strain Ps04 PS04TE_1__paired__contig_9, whole genome shotgun sequence

⇒Summary: seq-len = 38821 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38148-38777 bp Zoom in on locus 1 x11 CRISPR array Location: 38148-38777 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 38148-38777 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38148-38777 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: PQBU01000010.1 Pseudomonas aeruginosa strain Ps04 PS04TE_1__paired__contig_10, whole genome shotgun sequence

⇒Summary: seq-len = 191039 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35-9875 bp Zoom in on locus 1 x5 x17 CRISPR array Location: 35-303 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 35-303 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09739:cas6f Type: other Location: 486-1049 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1053-2081 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2092-3075 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3062-4366 bp Gene: COG1203:cas3 Type: Type-I Location: 4424-7654 bp Gene: cd09718:cas1 Type: universal Location: 7651-8625 bp CRISPR array Location: 8887-9875 bp Num of repeats: 17 Spacers: s5-s20 CRISPR array Location: 8887-9875 bp Num of repeats: 17 Spacers: s5-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 35-303 bp]: array | spacers
           [Locus range 8887-9875 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: PQBU01000014.1 Pseudomonas aeruginosa strain Ps04 PS04TE_1__paired__contig_14, whole genome shotgun sequence

⇒Summary: seq-len = 935202 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 406918-408085 bp Zoom in on locus 1 x20 CRISPR array Location: 406918-408085 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 406918-408085 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 406918-408085 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)