CRISPRone

CRISPRone report for GCA_002940825.1_ASM294082v1

♦ Seq 1: LRDM01000215.1 Clostridioides difficile strain 4380858 contig_86, whole genome shotgun sequence

⇒Summary: seq-len = 5535 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1611-1837 bp Zoom in on locus 1 x4 CRISPR array Location: 1611-1837 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1611-1837 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1611-1837 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LRDM01000150.1 Clostridioides difficile strain 4380858 contig_27, whole genome shotgun sequence

⇒Summary: seq-len = 56332 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10186-10805 bp Zoom in on locus 1 x10 CRISPR array Location: 10186-10805 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 10186-10805 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10186-10805 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LRDM01000049.1 Clostridioides difficile strain 4380858 contig_15, whole genome shotgun sequence

⇒Summary: seq-len = 82732 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23089-23250 bp Zoom in on locus 1 x3 CRISPR array Location: 23089-23250 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 23089-23250 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23089-23250 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: LRDM01000098.1 Clostridioides difficile strain 4380858 contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 239661 bp; # of CRISPR array = 0; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 115558-126512 bp 2 Locus 2: 177722-187445 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 115558-116064 bp Gene: unk Type: unknown Location: 116223-116891 bp Gene: unk Type: unknown Location: 117305-117811 bp Gene: cd06127:DEDDh Type: Type-I Location: 118179-119216 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 126027-126512 bp Gene: cd09641:cas3HD Type: Type-I Location: 177722-180130 bp Gene: cd09693:cas5 Type: Type-I Location: 180157-180954 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 180970-181983 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 182003-183469 bp Gene: pfam01881:cas6 Type: other Location: 183474-184211 bp Gene: unk Type: unknown Location: 184525-184983 bp Gene: cas14:cas14 Type: Type-V Location: 185011-186183 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 186336-187445 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: LRDM01000205.1 Clostridioides difficile strain 4380858 contig_77, whole genome shotgun sequence

⇒Summary: seq-len = 8191 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1809-1904 bp Zoom in on locus 1 x2 CRISPR array Location: 1809-1904 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1809-1904 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1809-1904 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: LRDM01000001.1 Clostridioides difficile strain 4380858 contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 258350 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 144054-144473 bp Zoom in on locus 1 x7 CRISPR array Location: 144054-144473 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 144054-144473 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 144054-144473 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)