CRISPRone

CRISPRone report for GCA_002940885.1_ASM294088v1

♦ Seq 1: LRDK01000024.1 Clostridioides difficile strain 4380227 contig_12, whole genome shotgun sequence

⇒Summary: seq-len = 74052 bp; # of CRISPR array = 1; # of cas gene = 11  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 546-12348 bp Zoom in on locus 1 x46 Gene: cd09652:cas6 Type: other Location: 546-980 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 992-1984 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2040-2414 bp Gene: pfam05107:cas7b Type: Type-I Location: 2721-2993 bp Gene: pfam05107:cas7b Type: Type-I Location: 2981-3715 bp Gene: cd09693:cas5 Type: Type-I Location: 3717-4049 bp Gene: unk Type: unknown Location: 4482-4622 bp Gene: cd09641:cas3HD Type: Type-I Location: 4891-5166 bp Gene: cd09639:cas3 Type: Type-I Location: 5183-6547 bp Gene: unk Type: unknown Location: 6876-7043 bp CRISPR array Location: 7234-10236 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 7234-10236 bp Num of repeats: 46 Spacers: s1-s45 Gene: pfam01930:cas4 Type: Type-I Location: 10320-10814 bp Gene: cd09722:cas1 Type: universal Location: 10840-11847 bp Gene: cd09725:cas2 Type: universal Location: 12058-12348 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7234-10236 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LRDK01000188.1 Clostridioides difficile strain 4380227 contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 110533 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 580-1138 bp 2 Locus 2: 74386-82251 bp Zoom in on locus 1 x9 Zoom in on locus 2 CRISPR array Location: 580-1138 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 580-1138 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 74386-75495 bp Gene: pfam01881:cas6 Type: other Location: 75753-76490 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 76495-77970 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 77990-79003 bp Gene: cd09693:cas5 Type: Type-I Location: 79019-79816 bp Gene: cd09641:cas3HD Type: Type-I Location: 79843-82251 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 580-1138 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LRDK01000231.1 Clostridioides difficile strain 4380227 contig_99, whole genome shotgun sequence

⇒Summary: seq-len = 7264 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4066-4813 bp Zoom in on locus 1 x12 CRISPR array Location: 4066-4813 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 4066-4813 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4066-4813 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: LRDK01000195.1 Clostridioides difficile strain 4380227 contig_66, whole genome shotgun sequence

⇒Summary: seq-len = 18186 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 485-646 bp Zoom in on locus 1 x3 CRISPR array Location: 485-646 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 485-646 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 485-646 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: LRDK01000046.1 Clostridioides difficile strain 4380227 contig_14, whole genome shotgun sequence

⇒Summary: seq-len = 72307 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53072-53432 bp Zoom in on locus 1 x6 CRISPR array Location: 53072-53432 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 53072-53432 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53072-53432 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: LRDK01000200.1 Clostridioides difficile strain 4380227 contig_70, whole genome shotgun sequence

⇒Summary: seq-len = 16471 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10132-10358 bp Zoom in on locus 1 x4 CRISPR array Location: 10132-10358 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 10132-10358 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10132-10358 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: LRDK01000066.1 Clostridioides difficile strain 4380227 contig_16, whole genome shotgun sequence

⇒Summary: seq-len = 67173 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53495-53916 bp Zoom in on locus 1 x7 CRISPR array Location: 53495-53916 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 53495-53916 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53495-53916 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)