CRISPRone

CRISPRone report for GCA_002945415.1_ASM294541v1

♦ Seq 1: CP026592.1 Clostridioides difficile strain CD-10-00484 chromosome, complete genome

⇒Summary: seq-len = 4119484 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1305541-1306495 bp 2 Locus 2: 1514883-1515570 bp 3 Locus 3: 1591517-1595530 bp 4 Locus 4: 1626255-1626549 bp 5 Locus 5: 1718931-1721442 bp 6 Locus 6: 1858719-1859804 bp 7 Locus 7: 2167580-2167674 bp 8 Locus 8: 2209294-2209919 bp 9 Locus 9: 2670167-2678042 bp 10 Locus 10: 3253551-3264600 bp 11 Locus 11: 3500372-3506904 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x17 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x23 Zoom in on locus 11 x10 CRISPR array Location: 1305541-1306495 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1305541-1306495 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1514883-1515570 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1514883-1515570 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1591517-1592116 bp Gene: unk Type: unknown Location: 1592284-1592751 bp Gene: COG2378:WYL Type: other Location: 1592856-1593773 bp Gene: cas14:cas14 Type: Type-V Location: 1594412-1595530 bp CRISPR array Location: 1626255-1626549 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1626255-1626549 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1718931-1719288 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1718931-1719288 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1721152-1721442 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1721152-1721442 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1858719-1859804 bp Num of repeats: 17 Spacers: s38-s53 CRISPR array Location: 1858719-1859804 bp Num of repeats: 17 Spacers: s38-s53 CRISPR array Location: 2167580-2167674 bp Num of repeats: 2 Spacers: s54-s54 CRISPR array Location: 2167580-2167674 bp Num of repeats: 2 Spacers: s54-s54 CRISPR array Location: 2209294-2209919 bp Num of repeats: 10 Spacers: s55-s63 CRISPR array Location: 2209294-2209919 bp Num of repeats: 10 Spacers: s55-s63 Gene: cd09641:cas3HD Type: Type-I Location: 2670167-2672575 bp Gene: cd09693:cas5 Type: Type-I Location: 2672602-2673408 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2673424-2674437 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2674457-2675932 bp Gene: pfam01881:cas6 Type: other Location: 2675937-2676674 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2676933-2678042 bp CRISPR array Location: 3253551-3255035 bp Num of repeats: 23 Spacers: s64-s85 CRISPR array Location: 3253551-3255035 bp Num of repeats: 23 Spacers: s64-s85 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3254397-3254630 bp Gene: unk Type: unknown Location: 3254852-3255019 bp Gene: cd09725:cas2 Type: universal Location: 3255219-3255485 bp Gene: cd09722:cas1 Type: universal Location: 3255488-3256468 bp Gene: pfam01930:cas4 Type: Type-I Location: 3256471-3256989 bp Gene: COG1203:cas3 Type: Type-I Location: 3257037-3259358 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3259369-3260070 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3260072-3260986 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3260988-3262865 bp Gene: pfam01881:cas6 Type: other Location: 3262871-3263665 bp Gene: pfam13280:WYL Type: other Location: 3263686-3264600 bp CRISPR array Location: 3500372-3500994 bp Num of repeats: 10 Spacers: s86-s94 CRISPR array Location: 3500372-3500994 bp Num of repeats: 10 Spacers: s86-s94 Gene: COG1203:cas3 Type: Type-I Location: 3501247-3503232 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3503243-3504313 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3504334-3505500 bp Gene: pfam01881:cas6 Type: other Location: 3505502-3506266 bp Gene: cd09693:cas5 Type: Type-I Location: 3506257-3506904 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1305541-1306495 bp]: array | spacers
           [Locus range 1514883-1515570 bp]: array | spacers
           [Locus range 1626255-1626549 bp]: array | spacers
           [Locus range 1718931-1719288 bp]: array | spacers
           [Locus range 1721152-1721442 bp]: array | spacers
           [Locus range 1858719-1859804 bp]: array | spacers
           [Locus range 2167580-2167674 bp]: array | spacers
           [Locus range 2209294-2209919 bp]: array | spacers
           [Locus range 3253551-3255035 bp]: array | spacers
           [Locus range 3500372-3500994 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)