CRISPRone

CRISPRone report for GCA_002945515.1_ASM294551v1

♦ Seq 1: CP026591.1 Clostridioides difficile strain CD-17-01474 chromosome, complete genome

⇒Summary: seq-len = 4201330 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1302361-1303319 bp 2 Locus 2: 1511707-1512394 bp 3 Locus 3: 1588341-1592354 bp 4 Locus 4: 1623078-1623372 bp 5 Locus 5: 1715755-1718266 bp 6 Locus 6: 1855544-1856368 bp 7 Locus 7: 2249099-2249193 bp 8 Locus 8: 2290814-2291439 bp 9 Locus 9: 2751689-2759564 bp 10 Locus 10: 3335147-3346329 bp 11 Locus 11: 3582152-3588684 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x13 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x25 Zoom in on locus 11 x10 CRISPR array Location: 1302361-1303319 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1302361-1303319 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1511707-1512394 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1511707-1512394 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1588341-1588940 bp Gene: unk Type: unknown Location: 1589108-1589575 bp Gene: COG2378:WYL Type: other Location: 1589680-1590597 bp Gene: cas14:cas14 Type: Type-V Location: 1591236-1592354 bp CRISPR array Location: 1623078-1623372 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1623078-1623372 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1715755-1716112 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1715755-1716112 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1717976-1718266 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1717976-1718266 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1855544-1856368 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 1855544-1856368 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 2249099-2249193 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2249099-2249193 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2290814-2291439 bp Num of repeats: 10 Spacers: s51-s59 CRISPR array Location: 2290814-2291439 bp Num of repeats: 10 Spacers: s51-s59 Gene: cd09641:cas3HD Type: Type-I Location: 2751689-2754097 bp Gene: cd09693:cas5 Type: Type-I Location: 2754124-2754930 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2754946-2755959 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2755979-2757454 bp Gene: pfam01881:cas6 Type: other Location: 2757459-2758196 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2758455-2759564 bp CRISPR array Location: 3335147-3336764 bp Num of repeats: 25 Spacers: s60-s83 CRISPR array Location: 3335147-3336764 bp Num of repeats: 25 Spacers: s60-s83 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3335993-3336226 bp Gene: unk Type: unknown Location: 3336448-3336615 bp Gene: cd09725:cas2 Type: universal Location: 3336948-3337214 bp Gene: cd09722:cas1 Type: universal Location: 3337217-3338197 bp Gene: pfam01930:cas4 Type: Type-I Location: 3338200-3338718 bp Gene: COG1203:cas3 Type: Type-I Location: 3338766-3341087 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3341098-3341799 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3341801-3342715 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3342717-3344594 bp Gene: pfam01881:cas6 Type: other Location: 3344600-3345394 bp Gene: pfam13280:WYL Type: other Location: 3345415-3346329 bp CRISPR array Location: 3582152-3582774 bp Num of repeats: 10 Spacers: s84-s92 CRISPR array Location: 3582152-3582774 bp Num of repeats: 10 Spacers: s84-s92 Gene: COG1203:cas3 Type: Type-I Location: 3583027-3585012 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3585023-3586093 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3586114-3587280 bp Gene: pfam01881:cas6 Type: other Location: 3587282-3588046 bp Gene: cd09693:cas5 Type: Type-I Location: 3588037-3588684 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1302361-1303319 bp]: array | spacers
           [Locus range 1511707-1512394 bp]: array | spacers
           [Locus range 1623078-1623372 bp]: array | spacers
           [Locus range 1715755-1716112 bp]: array | spacers
           [Locus range 1717976-1718266 bp]: array | spacers
           [Locus range 1855544-1856368 bp]: array | spacers
           [Locus range 2249099-2249193 bp]: array | spacers
           [Locus range 2290814-2291439 bp]: array | spacers
           [Locus range 3335147-3336764 bp]: array | spacers
           [Locus range 3582152-3582774 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)