CRISPRone

CRISPRone report for GCA_002945665.1_ASM294566v1

♦ Seq 1: CP026593.1 Clostridioides difficile strain 12-00008 chromosome, complete genome

⇒Summary: seq-len = 4119604 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1305732-1306690 bp 2 Locus 2: 1515078-1515765 bp 3 Locus 3: 1591712-1595725 bp 4 Locus 4: 1626449-1626743 bp 5 Locus 5: 1719126-1721637 bp 6 Locus 6: 1858911-1859735 bp 7 Locus 7: 2167512-2167606 bp 8 Locus 8: 2209227-2209852 bp 9 Locus 9: 2670102-2677977 bp 10 Locus 10: 3253517-3264699 bp 11 Locus 11: 3500521-3507053 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x13 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x25 Zoom in on locus 11 x10 CRISPR array Location: 1305732-1306690 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1305732-1306690 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1515078-1515765 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1515078-1515765 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1591712-1592311 bp Gene: unk Type: unknown Location: 1592479-1592946 bp Gene: COG2378:WYL Type: other Location: 1593051-1593968 bp Gene: cas14:cas14 Type: Type-V Location: 1594607-1595725 bp CRISPR array Location: 1626449-1626743 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1626449-1626743 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1719126-1719483 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1719126-1719483 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1721347-1721637 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1721347-1721637 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1858911-1859735 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 1858911-1859735 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 2167512-2167606 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2167512-2167606 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2209227-2209852 bp Num of repeats: 10 Spacers: s51-s59 CRISPR array Location: 2209227-2209852 bp Num of repeats: 10 Spacers: s51-s59 Gene: cd09641:cas3HD Type: Type-I Location: 2670102-2672510 bp Gene: cd09693:cas5 Type: Type-I Location: 2672537-2673343 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2673359-2674372 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2674392-2675867 bp Gene: pfam01881:cas6 Type: other Location: 2675872-2676609 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2676868-2677977 bp CRISPR array Location: 3253517-3255134 bp Num of repeats: 25 Spacers: s60-s83 CRISPR array Location: 3253517-3255134 bp Num of repeats: 25 Spacers: s60-s83 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3254363-3254596 bp Gene: unk Type: unknown Location: 3254818-3254985 bp Gene: cd09725:cas2 Type: universal Location: 3255318-3255584 bp Gene: cd09722:cas1 Type: universal Location: 3255587-3256567 bp Gene: pfam01930:cas4 Type: Type-I Location: 3256570-3257088 bp Gene: COG1203:cas3 Type: Type-I Location: 3257136-3259457 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3259468-3260169 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3260171-3261085 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3261087-3262964 bp Gene: pfam01881:cas6 Type: other Location: 3262970-3263764 bp Gene: pfam13280:WYL Type: other Location: 3263785-3264699 bp CRISPR array Location: 3500521-3501143 bp Num of repeats: 10 Spacers: s84-s92 CRISPR array Location: 3500521-3501143 bp Num of repeats: 10 Spacers: s84-s92 Gene: COG1203:cas3 Type: Type-I Location: 3501396-3503381 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3503392-3504462 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3504483-3505649 bp Gene: pfam01881:cas6 Type: other Location: 3505651-3506415 bp Gene: cd09693:cas5 Type: Type-I Location: 3506406-3507053 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1305732-1306690 bp]: array | spacers
           [Locus range 1515078-1515765 bp]: array | spacers
           [Locus range 1626449-1626743 bp]: array | spacers
           [Locus range 1719126-1719483 bp]: array | spacers
           [Locus range 1721347-1721637 bp]: array | spacers
           [Locus range 1858911-1859735 bp]: array | spacers
           [Locus range 2167512-2167606 bp]: array | spacers
           [Locus range 2209227-2209852 bp]: array | spacers
           [Locus range 3253517-3255134 bp]: array | spacers
           [Locus range 3500521-3501143 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)