CRISPRone

CRISPRone report for GCA_002945755.1_ASM294575v1

♦ Seq 1: CP026594.1 Clostridioides difficile strain 08-00495 chromosome, complete genome

⇒Summary: seq-len = 4177956 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1305974-1306932 bp 2 Locus 2: 1515320-1516007 bp 3 Locus 3: 1591954-1595967 bp 4 Locus 4: 1626691-1626985 bp 5 Locus 5: 1719368-1721879 bp 6 Locus 6: 1859186-1860010 bp 7 Locus 7: 2167787-2167881 bp 8 Locus 8: 2209502-2210127 bp 9 Locus 9: 2670377-2678252 bp 10 Locus 10: 3253779-3264961 bp 11 Locus 11: 3500784-3507316 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x13 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x25 Zoom in on locus 11 x10 CRISPR array Location: 1305974-1306932 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1305974-1306932 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1515320-1516007 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1515320-1516007 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1591954-1592553 bp Gene: unk Type: unknown Location: 1592721-1593188 bp Gene: COG2378:WYL Type: other Location: 1593293-1594210 bp Gene: cas14:cas14 Type: Type-V Location: 1594849-1595967 bp CRISPR array Location: 1626691-1626985 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1626691-1626985 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1719368-1719725 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1719368-1719725 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1721589-1721879 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1721589-1721879 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1859186-1860010 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 1859186-1860010 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 2167787-2167881 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2167787-2167881 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2209502-2210127 bp Num of repeats: 10 Spacers: s51-s59 CRISPR array Location: 2209502-2210127 bp Num of repeats: 10 Spacers: s51-s59 Gene: cd09641:cas3HD Type: Type-I Location: 2670377-2672785 bp Gene: cd09693:cas5 Type: Type-I Location: 2672812-2673618 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2673634-2674647 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2674667-2676142 bp Gene: pfam01881:cas6 Type: other Location: 2676147-2676884 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2677143-2678252 bp CRISPR array Location: 3253779-3255396 bp Num of repeats: 25 Spacers: s60-s83 CRISPR array Location: 3253779-3255396 bp Num of repeats: 25 Spacers: s60-s83 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3254625-3254858 bp Gene: unk Type: unknown Location: 3255080-3255247 bp Gene: cd09725:cas2 Type: universal Location: 3255580-3255846 bp Gene: cd09722:cas1 Type: universal Location: 3255849-3256829 bp Gene: pfam01930:cas4 Type: Type-I Location: 3256832-3257350 bp Gene: COG1203:cas3 Type: Type-I Location: 3257398-3259719 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3259730-3260431 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3260433-3261347 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3261349-3263226 bp Gene: pfam01881:cas6 Type: other Location: 3263232-3264026 bp Gene: pfam13280:WYL Type: other Location: 3264047-3264961 bp CRISPR array Location: 3500784-3501406 bp Num of repeats: 10 Spacers: s84-s92 CRISPR array Location: 3500784-3501406 bp Num of repeats: 10 Spacers: s84-s92 Gene: COG1203:cas3 Type: Type-I Location: 3501659-3503644 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3503655-3504725 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3504746-3505912 bp Gene: pfam01881:cas6 Type: other Location: 3505914-3506678 bp Gene: cd09693:cas5 Type: Type-I Location: 3506669-3507316 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1305974-1306932 bp]: array | spacers
           [Locus range 1515320-1516007 bp]: array | spacers
           [Locus range 1626691-1626985 bp]: array | spacers
           [Locus range 1719368-1719725 bp]: array | spacers
           [Locus range 1721589-1721879 bp]: array | spacers
           [Locus range 1859186-1860010 bp]: array | spacers
           [Locus range 2167787-2167881 bp]: array | spacers
           [Locus range 2209502-2210127 bp]: array | spacers
           [Locus range 3253779-3255396 bp]: array | spacers
           [Locus range 3500784-3501406 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)