CRISPRone

CRISPRone report for GCA_002945855.1_ASM294585v1

♦ Seq 1: CP026595.1 Clostridioides difficile strain 12-00011 chromosome, complete genome

⇒Summary: seq-len = 4119932 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1306044-1307002 bp 2 Locus 2: 1515390-1516077 bp 3 Locus 3: 1592024-1596037 bp 4 Locus 4: 1626760-1627054 bp 5 Locus 5: 1719436-1721947 bp 6 Locus 6: 1859219-1860043 bp 7 Locus 7: 2167820-2167914 bp 8 Locus 8: 2209535-2210160 bp 9 Locus 9: 2670410-2678285 bp 10 Locus 10: 3253831-3265013 bp 11 Locus 11: 3500837-3507369 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x13 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x25 Zoom in on locus 11 x10 CRISPR array Location: 1306044-1307002 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1306044-1307002 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1515390-1516077 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1515390-1516077 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1592024-1592623 bp Gene: unk Type: unknown Location: 1592791-1593258 bp Gene: COG2378:WYL Type: other Location: 1593363-1594280 bp Gene: cas14:cas14 Type: Type-V Location: 1594919-1596037 bp CRISPR array Location: 1626760-1627054 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1626760-1627054 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1719436-1719793 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1719436-1719793 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1721657-1721947 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1721657-1721947 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1859219-1860043 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 1859219-1860043 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 2167820-2167914 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2167820-2167914 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2209535-2210160 bp Num of repeats: 10 Spacers: s51-s59 CRISPR array Location: 2209535-2210160 bp Num of repeats: 10 Spacers: s51-s59 Gene: cd09641:cas3HD Type: Type-I Location: 2670410-2672818 bp Gene: cd09693:cas5 Type: Type-I Location: 2672845-2673651 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2673667-2674680 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2674700-2676175 bp Gene: pfam01881:cas6 Type: other Location: 2676180-2676917 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2677176-2678285 bp CRISPR array Location: 3253831-3255448 bp Num of repeats: 25 Spacers: s60-s83 CRISPR array Location: 3253831-3255448 bp Num of repeats: 25 Spacers: s60-s83 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3254677-3254910 bp Gene: unk Type: unknown Location: 3255132-3255299 bp Gene: cd09725:cas2 Type: universal Location: 3255632-3255898 bp Gene: cd09722:cas1 Type: universal Location: 3255901-3256881 bp Gene: pfam01930:cas4 Type: Type-I Location: 3256884-3257402 bp Gene: COG1203:cas3 Type: Type-I Location: 3257450-3259771 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3259782-3260483 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3260485-3261399 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3261401-3263278 bp Gene: pfam01881:cas6 Type: other Location: 3263284-3264078 bp Gene: pfam13280:WYL Type: other Location: 3264099-3265013 bp CRISPR array Location: 3500837-3501459 bp Num of repeats: 10 Spacers: s84-s92 CRISPR array Location: 3500837-3501459 bp Num of repeats: 10 Spacers: s84-s92 Gene: COG1203:cas3 Type: Type-I Location: 3501712-3503697 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3503708-3504778 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3504799-3505965 bp Gene: pfam01881:cas6 Type: other Location: 3505967-3506731 bp Gene: cd09693:cas5 Type: Type-I Location: 3506722-3507369 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1306044-1307002 bp]: array | spacers
           [Locus range 1515390-1516077 bp]: array | spacers
           [Locus range 1626760-1627054 bp]: array | spacers
           [Locus range 1719436-1719793 bp]: array | spacers
           [Locus range 1721657-1721947 bp]: array | spacers
           [Locus range 1859219-1860043 bp]: array | spacers
           [Locus range 2167820-2167914 bp]: array | spacers
           [Locus range 2209535-2210160 bp]: array | spacers
           [Locus range 3253831-3255448 bp]: array | spacers
           [Locus range 3500837-3501459 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)