CRISPRone

CRISPRone report for GCA_002945945.1_ASM294594v1

♦ Seq 1: CP026596.1 Clostridioides difficile strain 10-00071 chromosome, complete genome

⇒Summary: seq-len = 4119720 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1305902-1306860 bp 2 Locus 2: 1515248-1515869 bp 3 Locus 3: 1591816-1595829 bp 4 Locus 4: 1626553-1626847 bp 5 Locus 5: 1719230-1721741 bp 6 Locus 6: 1859014-1859838 bp 7 Locus 7: 2167615-2167709 bp 8 Locus 8: 2209329-2209954 bp 9 Locus 9: 2670204-2678079 bp 10 Locus 10: 3253619-3264801 bp 11 Locus 11: 3500623-3507155 bp Zoom in on locus 1 x15 Zoom in on locus 2 x10 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x13 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x25 Zoom in on locus 11 x10 CRISPR array Location: 1305902-1306860 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1305902-1306860 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1515248-1515869 bp Num of repeats: 10 Spacers: s15-s23 CRISPR array Location: 1515248-1515869 bp Num of repeats: 10 Spacers: s15-s23 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1591816-1592415 bp Gene: unk Type: unknown Location: 1592583-1593050 bp Gene: COG2378:WYL Type: other Location: 1593155-1594072 bp Gene: cas14:cas14 Type: Type-V Location: 1594711-1595829 bp CRISPR array Location: 1626553-1626847 bp Num of repeats: 5 Spacers: s24-s27 CRISPR array Location: 1626553-1626847 bp Num of repeats: 5 Spacers: s24-s27 CRISPR array Location: 1719230-1719587 bp Num of repeats: 6 Spacers: s28-s32 CRISPR array Location: 1719230-1719587 bp Num of repeats: 6 Spacers: s28-s32 CRISPR array Location: 1721451-1721741 bp Num of repeats: 5 Spacers: s33-s36 CRISPR array Location: 1721451-1721741 bp Num of repeats: 5 Spacers: s33-s36 CRISPR array Location: 1859014-1859838 bp Num of repeats: 13 Spacers: s37-s48 CRISPR array Location: 1859014-1859838 bp Num of repeats: 13 Spacers: s37-s48 CRISPR array Location: 2167615-2167709 bp Num of repeats: 2 Spacers: s49-s49 CRISPR array Location: 2167615-2167709 bp Num of repeats: 2 Spacers: s49-s49 CRISPR array Location: 2209329-2209954 bp Num of repeats: 10 Spacers: s50-s58 CRISPR array Location: 2209329-2209954 bp Num of repeats: 10 Spacers: s50-s58 Gene: cd09641:cas3HD Type: Type-I Location: 2670204-2672612 bp Gene: cd09693:cas5 Type: Type-I Location: 2672639-2673445 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2673461-2674474 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2674494-2675969 bp Gene: pfam01881:cas6 Type: other Location: 2675974-2676711 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2676970-2678079 bp CRISPR array Location: 3253619-3255236 bp Num of repeats: 25 Spacers: s59-s82 CRISPR array Location: 3253619-3255236 bp Num of repeats: 25 Spacers: s59-s82 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3254465-3254698 bp Gene: unk Type: unknown Location: 3254920-3255087 bp Gene: cd09725:cas2 Type: universal Location: 3255420-3255686 bp Gene: cd09722:cas1 Type: universal Location: 3255689-3256669 bp Gene: pfam01930:cas4 Type: Type-I Location: 3256672-3257190 bp Gene: COG1203:cas3 Type: Type-I Location: 3257238-3259559 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3259570-3260271 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3260273-3261187 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3261189-3263066 bp Gene: pfam01881:cas6 Type: other Location: 3263072-3263866 bp Gene: pfam13280:WYL Type: other Location: 3263887-3264801 bp CRISPR array Location: 3500623-3501245 bp Num of repeats: 10 Spacers: s83-s91 CRISPR array Location: 3500623-3501245 bp Num of repeats: 10 Spacers: s83-s91 Gene: COG1203:cas3 Type: Type-I Location: 3501498-3503483 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3503494-3504564 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3504585-3505751 bp Gene: pfam01881:cas6 Type: other Location: 3505753-3506517 bp Gene: cd09693:cas5 Type: Type-I Location: 3506508-3507155 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1305902-1306860 bp]: array | spacers
           [Locus range 1515248-1515869 bp]: array | spacers
           [Locus range 1626553-1626847 bp]: array | spacers
           [Locus range 1719230-1719587 bp]: array | spacers
           [Locus range 1721451-1721741 bp]: array | spacers
           [Locus range 1859014-1859838 bp]: array | spacers
           [Locus range 2167615-2167709 bp]: array | spacers
           [Locus range 2209329-2209954 bp]: array | spacers
           [Locus range 3253619-3255236 bp]: array | spacers
           [Locus range 3500623-3501245 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)