CRISPRone

CRISPRone report for GCA_002946035.1_ASM294603v1

♦ Seq 1: CP026597.1 Clostridioides difficile strain 10-00078 chromosome, complete genome

⇒Summary: seq-len = 4119749 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1305951-1306909 bp 2 Locus 2: 1515298-1515985 bp 3 Locus 3: 1591932-1595944 bp 4 Locus 4: 1626669-1626963 bp 5 Locus 5: 1719344-1721855 bp 6 Locus 6: 1859127-1859951 bp 7 Locus 7: 2167720-2167814 bp 8 Locus 8: 2209434-2210059 bp 9 Locus 9: 2670295-2678171 bp 10 Locus 10: 3253643-3264825 bp 11 Locus 11: 3500647-3507179 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x13 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x25 Zoom in on locus 11 x10 CRISPR array Location: 1305951-1306909 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1305951-1306909 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1515298-1515985 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1515298-1515985 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1591932-1592531 bp Gene: unk Type: unknown Location: 1592699-1592920 bp Gene: unk Type: unknown Location: 1592887-1593165 bp Gene: COG2378:WYL Type: other Location: 1593270-1594187 bp Gene: cas14:cas14 Type: Type-V Location: 1594826-1595944 bp CRISPR array Location: 1626669-1626963 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1626669-1626963 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1719344-1719701 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1719344-1719701 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1721565-1721855 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1721565-1721855 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1859127-1859951 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 1859127-1859951 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 2167720-2167814 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2167720-2167814 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2209434-2210059 bp Num of repeats: 10 Spacers: s51-s59 CRISPR array Location: 2209434-2210059 bp Num of repeats: 10 Spacers: s51-s59 Gene: cd09641:cas3HD Type: Type-I Location: 2670295-2672703 bp Gene: cd09693:cas5 Type: Type-I Location: 2672730-2673536 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2673552-2674565 bp Gene: unk Type: unknown Location: 2674585-2674848 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2674838-2676061 bp Gene: pfam01881:cas6 Type: other Location: 2676066-2676803 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2677062-2678171 bp CRISPR array Location: 3253643-3255260 bp Num of repeats: 25 Spacers: s60-s83 CRISPR array Location: 3253643-3255260 bp Num of repeats: 25 Spacers: s60-s83 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3254489-3254722 bp Gene: unk Type: unknown Location: 3254944-3255111 bp Gene: cd09725:cas2 Type: universal Location: 3255444-3255710 bp Gene: cd09722:cas1 Type: universal Location: 3255713-3256693 bp Gene: pfam01930:cas4 Type: Type-I Location: 3256696-3257214 bp Gene: COG1203:cas3 Type: Type-I Location: 3257262-3259583 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3259594-3260295 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3260297-3261211 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3261213-3263090 bp Gene: pfam01881:cas6 Type: other Location: 3263096-3263890 bp Gene: pfam13280:WYL Type: other Location: 3263911-3264825 bp CRISPR array Location: 3500647-3501269 bp Num of repeats: 10 Spacers: s84-s92 CRISPR array Location: 3500647-3501269 bp Num of repeats: 10 Spacers: s84-s92 Gene: COG1203:cas3 Type: Type-I Location: 3501522-3503507 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3503518-3504588 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3504609-3505775 bp Gene: pfam01881:cas6 Type: other Location: 3505777-3506541 bp Gene: cd09693:cas5 Type: Type-I Location: 3506532-3507179 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1305951-1306909 bp]: array | spacers
           [Locus range 1515298-1515985 bp]: array | spacers
           [Locus range 1626669-1626963 bp]: array | spacers
           [Locus range 1719344-1719701 bp]: array | spacers
           [Locus range 1721565-1721855 bp]: array | spacers
           [Locus range 1859127-1859951 bp]: array | spacers
           [Locus range 2167720-2167814 bp]: array | spacers
           [Locus range 2209434-2210059 bp]: array | spacers
           [Locus range 3253643-3255260 bp]: array | spacers
           [Locus range 3500647-3501269 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)