CRISPRone

CRISPRone report for GCA_002946135.1_ASM294613v1

♦ Seq 1: CP026598.1 Clostridioides difficile strain 10-00253 chromosome, complete genome

⇒Summary: seq-len = 4120065 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1306125-1307083 bp 2 Locus 2: 1515472-1516159 bp 3 Locus 3: 1592106-1596119 bp 4 Locus 4: 1626843-1627137 bp 5 Locus 5: 1719521-1722032 bp 6 Locus 6: 1859311-1860135 bp 7 Locus 7: 2167914-2168008 bp 8 Locus 8: 2209629-2210254 bp 9 Locus 9: 2670504-2678379 bp 10 Locus 10: 3253864-3265046 bp 11 Locus 11: 3500869-3507401 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x13 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x25 Zoom in on locus 11 x10 CRISPR array Location: 1306125-1307083 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1306125-1307083 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1515472-1516159 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1515472-1516159 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1592106-1592705 bp Gene: unk Type: unknown Location: 1592873-1593340 bp Gene: COG2378:WYL Type: other Location: 1593445-1594362 bp Gene: cas14:cas14 Type: Type-V Location: 1595001-1596119 bp CRISPR array Location: 1626843-1627137 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1626843-1627137 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1719521-1719878 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1719521-1719878 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1721742-1722032 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1721742-1722032 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1859311-1860135 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 1859311-1860135 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 2167914-2168008 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2167914-2168008 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2209629-2210254 bp Num of repeats: 10 Spacers: s51-s59 CRISPR array Location: 2209629-2210254 bp Num of repeats: 10 Spacers: s51-s59 Gene: cd09641:cas3HD Type: Type-I Location: 2670504-2672912 bp Gene: cd09693:cas5 Type: Type-I Location: 2672939-2673745 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2673761-2674774 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2674794-2676269 bp Gene: pfam01881:cas6 Type: other Location: 2676274-2677011 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2677270-2678379 bp CRISPR array Location: 3253864-3255481 bp Num of repeats: 25 Spacers: s60-s83 CRISPR array Location: 3253864-3255481 bp Num of repeats: 25 Spacers: s60-s83 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3254710-3254943 bp Gene: unk Type: unknown Location: 3255165-3255332 bp Gene: cd09725:cas2 Type: universal Location: 3255665-3255931 bp Gene: cd09722:cas1 Type: universal Location: 3255934-3256914 bp Gene: pfam01930:cas4 Type: Type-I Location: 3256917-3257435 bp Gene: COG1203:cas3 Type: Type-I Location: 3257483-3259804 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3259815-3260516 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3260518-3261432 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3261434-3263311 bp Gene: pfam01881:cas6 Type: other Location: 3263317-3264111 bp Gene: pfam13280:WYL Type: other Location: 3264132-3265046 bp CRISPR array Location: 3500869-3501491 bp Num of repeats: 10 Spacers: s84-s92 CRISPR array Location: 3500869-3501491 bp Num of repeats: 10 Spacers: s84-s92 Gene: COG1203:cas3 Type: Type-I Location: 3501744-3503729 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3503740-3504810 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3504831-3505997 bp Gene: pfam01881:cas6 Type: other Location: 3505999-3506763 bp Gene: cd09693:cas5 Type: Type-I Location: 3506754-3507401 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1306125-1307083 bp]: array | spacers
           [Locus range 1515472-1516159 bp]: array | spacers
           [Locus range 1626843-1627137 bp]: array | spacers
           [Locus range 1719521-1719878 bp]: array | spacers
           [Locus range 1721742-1722032 bp]: array | spacers
           [Locus range 1859311-1860135 bp]: array | spacers
           [Locus range 2167914-2168008 bp]: array | spacers
           [Locus range 2209629-2210254 bp]: array | spacers
           [Locus range 3253864-3255481 bp]: array | spacers
           [Locus range 3500869-3501491 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)