CRISPRone

CRISPRone report for GCA_002946195.1_ASM294619v1

♦ Seq 1: CP026599.1 Clostridioides difficile strain 09-00072 chromosome, complete genome

⇒Summary: seq-len = 4119929 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1305915-1306869 bp 2 Locus 2: 1515257-1515944 bp 3 Locus 3: 1591891-1595904 bp 4 Locus 4: 1626629-1626923 bp 5 Locus 5: 1719306-1721817 bp 6 Locus 6: 1859094-1860179 bp 7 Locus 7: 2167956-2168050 bp 8 Locus 8: 2209671-2210296 bp 9 Locus 9: 2670544-2678419 bp 10 Locus 10: 3253916-3264965 bp 11 Locus 11: 3500788-3507320 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x17 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x23 Zoom in on locus 11 x10 CRISPR array Location: 1305915-1306869 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1305915-1306869 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1515257-1515944 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1515257-1515944 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1591891-1592490 bp Gene: unk Type: unknown Location: 1592658-1593125 bp Gene: COG2378:WYL Type: other Location: 1593230-1594147 bp Gene: cas14:cas14 Type: Type-V Location: 1594786-1595904 bp CRISPR array Location: 1626629-1626923 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1626629-1626923 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1719306-1719663 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1719306-1719663 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1721527-1721817 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1721527-1721817 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1859094-1860179 bp Num of repeats: 17 Spacers: s38-s53 CRISPR array Location: 1859094-1860179 bp Num of repeats: 17 Spacers: s38-s53 CRISPR array Location: 2167956-2168050 bp Num of repeats: 2 Spacers: s54-s54 CRISPR array Location: 2167956-2168050 bp Num of repeats: 2 Spacers: s54-s54 CRISPR array Location: 2209671-2210296 bp Num of repeats: 10 Spacers: s55-s63 CRISPR array Location: 2209671-2210296 bp Num of repeats: 10 Spacers: s55-s63 Gene: cd09641:cas3HD Type: Type-I Location: 2670544-2672952 bp Gene: cd09693:cas5 Type: Type-I Location: 2672979-2673785 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2673801-2674814 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2674834-2676309 bp Gene: pfam01881:cas6 Type: other Location: 2676314-2677051 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2677310-2678419 bp CRISPR array Location: 3253916-3255400 bp Num of repeats: 23 Spacers: s64-s85 CRISPR array Location: 3253916-3255400 bp Num of repeats: 23 Spacers: s64-s85 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3254762-3254995 bp Gene: unk Type: unknown Location: 3255217-3255384 bp Gene: cd09725:cas2 Type: universal Location: 3255584-3255850 bp Gene: cd09722:cas1 Type: universal Location: 3255853-3256833 bp Gene: pfam01930:cas4 Type: Type-I Location: 3256836-3257354 bp Gene: COG1203:cas3 Type: Type-I Location: 3257402-3259723 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3259734-3260435 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3260437-3261351 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3261353-3263230 bp Gene: pfam01881:cas6 Type: other Location: 3263236-3264030 bp Gene: pfam13280:WYL Type: other Location: 3264051-3264965 bp CRISPR array Location: 3500788-3501410 bp Num of repeats: 10 Spacers: s86-s94 CRISPR array Location: 3500788-3501410 bp Num of repeats: 10 Spacers: s86-s94 Gene: COG1203:cas3 Type: Type-I Location: 3501663-3503648 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3503659-3504729 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3504750-3505916 bp Gene: pfam01881:cas6 Type: other Location: 3505918-3506682 bp Gene: cd09693:cas5 Type: Type-I Location: 3506673-3507320 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1305915-1306869 bp]: array | spacers
           [Locus range 1515257-1515944 bp]: array | spacers
           [Locus range 1626629-1626923 bp]: array | spacers
           [Locus range 1719306-1719663 bp]: array | spacers
           [Locus range 1721527-1721817 bp]: array | spacers
           [Locus range 1859094-1860179 bp]: array | spacers
           [Locus range 2167956-2168050 bp]: array | spacers
           [Locus range 2209671-2210296 bp]: array | spacers
           [Locus range 3253916-3255400 bp]: array | spacers
           [Locus range 3500788-3501410 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)