CRISPRone

CRISPRone report for GCA_002946515.2_ASM294651v2

♦ Seq 1: CP026613.2 Clostridioides difficile strain R1 chromosome, complete genome

⇒Summary: seq-len = 4093143 bp; # of CRISPR array = 6; # of cas gene = 27  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1244809-1245436 bp 2 Locus 2: 1745884-1747033 bp 3 Locus 3: 2198362-2210672 bp 4 Locus 4: 2248175-2248988 bp 5 Locus 5: 2356977-2368630 bp 6 Locus 6: 2656282-2667235 bp 7 Locus 7: 2719838-2726326 bp 8 Locus 8: 3312232-3323930 bp Zoom in on locus 1 x10 Zoom in on locus 2 x18 Zoom in on locus 3 x44 Zoom in on locus 4 x13 Zoom in on locus 5 x40 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x33 CRISPR array Location: 1244809-1245436 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1244809-1245436 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1745884-1747033 bp Num of repeats: 18 Spacers: s10-s26 CRISPR array Location: 1745884-1747033 bp Num of repeats: 18 Spacers: s10-s26 CRISPR array Location: 2198362-2201226 bp Num of repeats: 44 Spacers: s27-s69 CRISPR array Location: 2198362-2201226 bp Num of repeats: 44 Spacers: s27-s69 Gene: cd09718:cas1 Type: universal Location: 2208628-2210283 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2210295-2210672 bp CRISPR array Location: 2248175-2248988 bp Num of repeats: 13 Spacers: s70-s81 CRISPR array Location: 2248175-2248988 bp Num of repeats: 13 Spacers: s70-s81 Gene: cd09725:cas2 Type: universal Location: 2356977-2357267 bp Gene: cd09722:cas1 Type: universal Location: 2357478-2358485 bp Gene: pfam01930:cas4 Type: Type-I Location: 2358511-2359005 bp CRISPR array Location: 2359090-2361688 bp Num of repeats: 40 Spacers: s82-s120 CRISPR array Location: 2359090-2361688 bp Num of repeats: 40 Spacers: s82-s120 Gene: unk Type: unknown Location: 2359713-2359841 bp Gene: cd09641:cas3HD Type: Type-I Location: 2361878-2364436 bp Gene: cd09693:cas5 Type: Type-I Location: 2364460-2365200 bp Gene: pfam05107:cas7b Type: Type-I Location: 2365202-2366191 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2366184-2367923 bp Gene: cd09652:cas6 Type: other Location: 2367935-2368630 bp Gene: cd06127:DEDDh Type: Type-I Location: 2656282-2656788 bp Gene: unk Type: unknown Location: 2656947-2657615 bp Gene: unk Type: unknown Location: 2658028-2658534 bp Gene: cd06127:DEDDh Type: Type-I Location: 2658898-2659935 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2666750-2667235 bp Gene: cd09641:cas3HD Type: Type-I Location: 2719838-2722246 bp Gene: cd09693:cas5 Type: Type-I Location: 2722273-2723070 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2723086-2724099 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2724118-2725584 bp Gene: pfam01881:cas6 Type: other Location: 2725589-2726326 bp CRISPR array Location: 3312232-3314353 bp Num of repeats: 33 Spacers: s121-s152 CRISPR array Location: 3312232-3314353 bp Num of repeats: 33 Spacers: s121-s152 Gene: cd09725:cas2 Type: universal Location: 3314537-3314803 bp Gene: cd09722:cas1 Type: universal Location: 3314806-3315786 bp Gene: pfam01930:cas4 Type: Type-I Location: 3315789-3316307 bp Gene: COG1203:cas3 Type: Type-I Location: 3316355-3318676 bp Gene: cd09693:cas5 Type: Type-I Location: 3318687-3319388 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3319390-3320304 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3320306-3322156 bp Gene: pfam01881:cas6 Type: other Location: 3322162-3322956 bp Gene: pfam13280:WYL Type: other Location: 3322977-3323930 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1244809-1245436 bp]: array | spacers
           [Locus range 1745884-1747033 bp]: array | spacers
           [Locus range 2198362-2201226 bp]: array | spacers
           [Locus range 2248175-2248988 bp]: array | spacers
           [Locus range 2359090-2361688 bp]: array | spacers
           [Locus range 3312232-3314353 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)