CRISPRone

CRISPRone report for GCA_002946535.2_ASM294653v2

♦ Seq 1: CP026615.2 Clostridioides difficile strain R3 chromosome, complete genome

⇒Summary: seq-len = 4093147 bp; # of CRISPR array = 6; # of cas gene = 27  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 770910-782609 bp 2 Locus 2: 1368515-1375003 bp 3 Locus 3: 1427606-1438559 bp 4 Locus 4: 1726211-1737864 bp 5 Locus 5: 1845853-1846667 bp 6 Locus 6: 1884169-1896480 bp 7 Locus 7: 2347809-2348957 bp 8 Locus 8: 2849402-2850028 bp Zoom in on locus 1 x33 Zoom in on locus 2 Zoom in on locus 3 Zoom in on locus 4 x40 Zoom in on locus 5 x13 Zoom in on locus 6 x44 Zoom in on locus 7 x18 Zoom in on locus 8 x10 Gene: pfam13280:WYL Type: other Location: 770910-771863 bp Gene: pfam01881:cas6 Type: other Location: 771884-772678 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 772684-774534 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 774536-775450 bp Gene: cd09693:cas5 Type: Type-I Location: 775452-776153 bp Gene: COG1203:cas3 Type: Type-I Location: 776164-778485 bp Gene: pfam01930:cas4 Type: Type-I Location: 778500-779051 bp Gene: cd09722:cas1 Type: universal Location: 779054-780034 bp Gene: cd09725:cas2 Type: universal Location: 780037-780303 bp CRISPR array Location: 780487-782609 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 780487-782609 bp Num of repeats: 33 Spacers: s1-s32 Gene: pfam01881:cas6 Type: other Location: 1368515-1369252 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1369257-1370723 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1370742-1371755 bp Gene: cd09693:cas5 Type: Type-I Location: 1371771-1372568 bp Gene: cd09641:cas3HD Type: Type-I Location: 1372595-1375003 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 1427606-1428091 bp Gene: cd06127:DEDDh Type: Type-I Location: 1434906-1435943 bp Gene: unk Type: unknown Location: 1436307-1436813 bp Gene: unk Type: unknown Location: 1437226-1437894 bp Gene: cd06127:DEDDh Type: Type-I Location: 1438053-1438559 bp Gene: cd09652:cas6 Type: other Location: 1726211-1726906 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 1726918-1728657 bp Gene: pfam05107:cas7b Type: Type-I Location: 1728650-1729639 bp Gene: cd09693:cas5 Type: Type-I Location: 1729641-1730381 bp Gene: cd09641:cas3HD Type: Type-I Location: 1730405-1732963 bp CRISPR array Location: 1733153-1735752 bp Num of repeats: 40 Spacers: s33-s71 CRISPR array Location: 1733153-1735752 bp Num of repeats: 40 Spacers: s33-s71 Gene: unk Type: unknown Location: 1735000-1735128 bp Gene: pfam01930:cas4 Type: Type-I Location: 1735836-1736330 bp Gene: cd09722:cas1 Type: universal Location: 1736365-1737363 bp Gene: cd09725:cas2 Type: universal Location: 1737574-1737864 bp CRISPR array Location: 1845853-1846667 bp Num of repeats: 13 Spacers: s72-s83 CRISPR array Location: 1845853-1846667 bp Num of repeats: 13 Spacers: s72-s83 Gene: COG0640:csa3 Type: Subtype-I-A Location: 1884169-1884546 bp Gene: cd09718:cas1 Type: universal Location: 1884558-1886213 bp CRISPR array Location: 1893615-1896480 bp Num of repeats: 44 Spacers: s84-s126 CRISPR array Location: 1893615-1896480 bp Num of repeats: 44 Spacers: s84-s126 CRISPR array Location: 2347809-2348957 bp Num of repeats: 18 Spacers: s127-s143 CRISPR array Location: 2347809-2348957 bp Num of repeats: 18 Spacers: s127-s143 CRISPR array Location: 2849402-2850028 bp Num of repeats: 10 Spacers: s144-s152 CRISPR array Location: 2849402-2850028 bp Num of repeats: 10 Spacers: s144-s152 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 780487-782609 bp]: array | spacers
           [Locus range 1733153-1735752 bp]: array | spacers
           [Locus range 1845853-1846667 bp]: array | spacers
           [Locus range 1893615-1896480 bp]: array | spacers
           [Locus range 2347809-2348957 bp]: array | spacers
           [Locus range 2849402-2850028 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)