CRISPRone

CRISPRone report for GCA_002946555.2_ASM294655v2

♦ Seq 1: CP026614.2 Clostridioides difficile strain R2 chromosome, complete genome

⇒Summary: seq-len = 4093145 bp; # of CRISPR array = 6; # of cas gene = 27  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1244816-1245443 bp 2 Locus 2: 1745887-1747036 bp 3 Locus 3: 2198364-2210674 bp 4 Locus 4: 2248177-2248990 bp 5 Locus 5: 2356979-2368632 bp 6 Locus 6: 2656284-2667237 bp 7 Locus 7: 2719840-2726328 bp 8 Locus 8: 3312234-3323932 bp Zoom in on locus 1 x10 Zoom in on locus 2 x18 Zoom in on locus 3 x44 Zoom in on locus 4 x13 Zoom in on locus 5 x40 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x33 CRISPR array Location: 1244816-1245443 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1244816-1245443 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1745887-1747036 bp Num of repeats: 18 Spacers: s10-s26 CRISPR array Location: 1745887-1747036 bp Num of repeats: 18 Spacers: s10-s26 CRISPR array Location: 2198364-2201228 bp Num of repeats: 44 Spacers: s27-s69 CRISPR array Location: 2198364-2201228 bp Num of repeats: 44 Spacers: s27-s69 Gene: cd09718:cas1 Type: universal Location: 2208630-2210285 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2210297-2210674 bp CRISPR array Location: 2248177-2248990 bp Num of repeats: 13 Spacers: s70-s81 CRISPR array Location: 2248177-2248990 bp Num of repeats: 13 Spacers: s70-s81 Gene: cd09725:cas2 Type: universal Location: 2356979-2357269 bp Gene: cd09722:cas1 Type: universal Location: 2357480-2358487 bp Gene: pfam01930:cas4 Type: Type-I Location: 2358513-2359007 bp CRISPR array Location: 2359092-2361690 bp Num of repeats: 40 Spacers: s82-s120 CRISPR array Location: 2359092-2361690 bp Num of repeats: 40 Spacers: s82-s120 Gene: unk Type: unknown Location: 2359715-2359843 bp Gene: cd09641:cas3HD Type: Type-I Location: 2361880-2364438 bp Gene: cd09693:cas5 Type: Type-I Location: 2364462-2365202 bp Gene: pfam05107:cas7b Type: Type-I Location: 2365204-2366193 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2366186-2367925 bp Gene: cd09652:cas6 Type: other Location: 2367937-2368632 bp Gene: cd06127:DEDDh Type: Type-I Location: 2656284-2656790 bp Gene: unk Type: unknown Location: 2656949-2657617 bp Gene: unk Type: unknown Location: 2658030-2658536 bp Gene: cd06127:DEDDh Type: Type-I Location: 2658900-2659937 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2666752-2667237 bp Gene: cd09641:cas3HD Type: Type-I Location: 2719840-2722248 bp Gene: cd09693:cas5 Type: Type-I Location: 2722275-2723072 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2723088-2724101 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2724120-2725586 bp Gene: pfam01881:cas6 Type: other Location: 2725591-2726328 bp CRISPR array Location: 3312234-3314355 bp Num of repeats: 33 Spacers: s121-s152 CRISPR array Location: 3312234-3314355 bp Num of repeats: 33 Spacers: s121-s152 Gene: cd09725:cas2 Type: universal Location: 3314539-3314805 bp Gene: cd09722:cas1 Type: universal Location: 3314808-3315788 bp Gene: pfam01930:cas4 Type: Type-I Location: 3315791-3316309 bp Gene: COG1203:cas3 Type: Type-I Location: 3316357-3318678 bp Gene: cd09693:cas5 Type: Type-I Location: 3318689-3319390 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3319392-3320306 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3320308-3322158 bp Gene: pfam01881:cas6 Type: other Location: 3322164-3322958 bp Gene: pfam13280:WYL Type: other Location: 3322979-3323932 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1244816-1245443 bp]: array | spacers
           [Locus range 1745887-1747036 bp]: array | spacers
           [Locus range 2198364-2201228 bp]: array | spacers
           [Locus range 2248177-2248990 bp]: array | spacers
           [Locus range 2359092-2361690 bp]: array | spacers
           [Locus range 3312234-3314355 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)