CRISPRone

CRISPRone report for GCA_002946935.1_ASM294693v1

♦ Seq 1: CP026680.1 Pseudomonas aeruginosa strain F5677 chromosome, complete genome

⇒Summary: seq-len = 6645227 bp; # of CRISPR array = 3; # of cas gene = 12  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4332752-4343566 bp 2 Locus 2: 6294786-6307528 bp Zoom in on locus 1 x14 x6 x6 Zoom in on locus 2 CRISPR array Location: 4332752-4333573 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 4332752-4333573 bp Num of repeats: 14 Spacers: s1-s13 Gene: pfam09707:cas2 Type: universal Location: 4333638-4333937 bp Gene: COG1518:cas1 Type: universal Location: 4333934-4334536 bp Gene: cd09719:cas1 Type: universal Location: 4334585-4334824 bp Gene: pfam08798:cas6e Type: other Location: 4334851-4335390 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 4335437-4336099 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 4336101-4337243 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 4337253-4337783 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 4337780-4339348 bp Gene: cd09641:cas3HD Type: Type-I Location: 4339351-4342032 bp CRISPR array Location: 4342805-4343138 bp Num of repeats: 6 Spacers: s14-s18 CRISPR array Location: 4342805-4343138 bp Num of repeats: 6 Spacers: s14-s18 CRISPR array Location: 4343233-4343566 bp Num of repeats: 6 Spacers: s19-s23 CRISPR array Location: 4343233-4343566 bp Num of repeats: 6 Spacers: s19-s23 Gene: cd06127:DEDDh Type: Type-I Location: 6294786-6295331 bp Gene: unk Type: unknown Location: 6302794-6303258 bp Gene: mkCas0071:csa5gr11 Type: Subtype-I-A Location: 6303383-6305368 bp Gene: unk Type: unknown Location: 6305411-6306460 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 6306611-6307528 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4332752-4333573 bp]: array | spacers
           [Locus range 4342805-4343138 bp]: array | spacers
           [Locus range 4343233-4343566 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)