CRISPRone

CRISPRone report for GCA_002954285.1_ASM295428v1

♦ Seq 1: LJCN01000004.1 Clostridioides difficile strain LIBA5758 .11940_2_57.4, whole genome shotgun sequence

⇒Summary: seq-len = 236318 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45084-52959 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45084-47492 bp Gene: cd09693:cas5 Type: Type-I Location: 47519-48325 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48341-49354 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49374-50849 bp Gene: pfam01881:cas6 Type: other Location: 50854-51591 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51850-52959 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LJCN01000001.1 Clostridioides difficile strain LIBA5758 .11940_2_57.1, whole genome shotgun sequence

⇒Summary: seq-len = 353728 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11900-11994 bp 2 Locus 2: 53652-54277 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 11900-11994 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 11900-11994 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 53652-54277 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 53652-54277 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11900-11994 bp]: array | spacers
           [Locus range 53652-54277 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LJCN01000012.1 Clostridioides difficile strain LIBA5758 .11940_2_57.12, whole genome shotgun sequence

⇒Summary: seq-len = 140977 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16443-26752 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 16443-17330 bp Gene: pfam01881:cas6 Type: other Location: 17408-18145 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18151-20028 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20030-20944 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 20946-21647 bp Gene: COG1203:cas3 Type: Type-I Location: 21658-23979 bp Gene: pfam01930:cas4 Type: Type-I Location: 23994-24545 bp Gene: cd09722:cas1 Type: universal Location: 24548-25528 bp Gene: cd09725:cas2 Type: universal Location: 25531-25797 bp CRISPR array Location: 25981-27599 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 25981-27599 bp Num of repeats: 25 Spacers: s1-s24 Gene: unk Type: unknown Location: 26130-26297 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26519-26752 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25981-27599 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: LJCN01000003.1 Clostridioides difficile strain LIBA5758 .11940_2_57.3, whole genome shotgun sequence

⇒Summary: seq-len = 289245 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78425-79111 bp 2 Locus 2: 287500-288457 bp Zoom in on locus 1 x11 Zoom in on locus 2 x15 CRISPR array Location: 78425-79111 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 78425-79111 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 287500-288457 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 287500-288457 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78425-79111 bp]: array | spacers
           [Locus range 287500-288457 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: LJCN01000002.1 Clostridioides difficile strain LIBA5758 .11940_2_57.2, whole genome shotgun sequence

⇒Summary: seq-len = 309543 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112356-113180 bp Zoom in on locus 1 x13 CRISPR array Location: 112356-113180 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 112356-113180 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112356-113180 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: LJCN01000008.1 Clostridioides difficile strain LIBA5758 .11940_2_57.8, whole genome shotgun sequence

⇒Summary: seq-len = 186531 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69537-76069 bp Zoom in on locus 1 x10 CRISPR array Location: 69537-70159 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69537-70159 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70412-72397 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72408-73478 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73499-74665 bp Gene: pfam01881:cas6 Type: other Location: 74667-75431 bp Gene: cd09693:cas5 Type: Type-I Location: 75422-76069 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69537-70159 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: LJCN01000009.1 Clostridioides difficile strain LIBA5758 .11940_2_57.9, whole genome shotgun sequence

⇒Summary: seq-len = 149122 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23216-25726 bp 2 Locus 2: 118118-118411 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23216-23505 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23216-23505 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25370-25726 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25370-25726 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118118-118411 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118118-118411 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23216-23505 bp]: array | spacers
           [Locus range 25370-25726 bp]: array | spacers
           [Locus range 118118-118411 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)