CRISPRone

CRISPRone report for GCA_002954305.1_ASM295430v1

♦ Seq 1: LJCM01000001.1 Clostridioides difficile strain LIBA5757 .11940_2_56.1, whole genome shotgun sequence

⇒Summary: seq-len = 525964 bp; # of CRISPR array = 7; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 278433-279456 bp 2 Locus 2: 297528-298280 bp 3 Locus 3: 332847-338945 bp 4 Locus 4: 381155-381317 bp Zoom in on locus 1 x16 Zoom in on locus 2 x12 Zoom in on locus 3 x6 x4 x3 x8 Zoom in on locus 4 x3 CRISPR array Location: 278433-279456 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 278433-279456 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 297528-298280 bp Num of repeats: 12 Spacers: s16-s26 CRISPR array Location: 297528-298280 bp Num of repeats: 12 Spacers: s16-s26 CRISPR array Location: 332847-333204 bp Num of repeats: 6 Spacers: s27-s31 CRISPR array Location: 332847-333204 bp Num of repeats: 6 Spacers: s27-s31 CRISPR array Location: 336037-336263 bp Num of repeats: 4 Spacers: s32-s34 CRISPR array Location: 336037-336263 bp Num of repeats: 4 Spacers: s32-s34 CRISPR array Location: 336497-336658 bp Num of repeats: 3 Spacers: s35-s36 CRISPR array Location: 336497-336658 bp Num of repeats: 3 Spacers: s35-s36 CRISPR array Location: 338457-338945 bp Num of repeats: 8 Spacers: s37-s43 CRISPR array Location: 338457-338945 bp Num of repeats: 8 Spacers: s37-s43 CRISPR array Location: 381155-381317 bp Num of repeats: 3 Spacers: s44-s45 CRISPR array Location: 381155-381317 bp Num of repeats: 3 Spacers: s44-s45 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 278433-279456 bp]: array | spacers
           [Locus range 297528-298280 bp]: array | spacers
           [Locus range 332847-333204 bp]: array | spacers
           [Locus range 336037-336263 bp]: array | spacers
           [Locus range 336497-336658 bp]: array | spacers
           [Locus range 338457-338945 bp]: array | spacers
           [Locus range 381155-381317 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LJCM01000006.1 Clostridioides difficile strain LIBA5757 .11940_2_56.6, whole genome shotgun sequence

⇒Summary: seq-len = 275503 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 154240-162106 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 154240-156648 bp Gene: cd09693:cas5 Type: Type-I Location: 156675-157481 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 157497-158510 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 158530-159996 bp Gene: pfam01881:cas6 Type: other Location: 160001-160738 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 160997-162106 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LJCM01000005.1 Clostridioides difficile strain LIBA5757 .11940_2_56.5, whole genome shotgun sequence

⇒Summary: seq-len = 277431 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 249053-260495 bp Zoom in on locus 1 x29 CRISPR array Location: 249053-250930 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 249053-250930 bp Num of repeats: 29 Spacers: s1-s28 Gene: cd09725:cas2 Type: universal Location: 251114-251380 bp Gene: cd09722:cas1 Type: universal Location: 251383-252363 bp Gene: pfam01930:cas4 Type: Type-I Location: 252366-252884 bp Gene: COG1203:cas3 Type: Type-I Location: 252932-255253 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 255264-255965 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 255967-256881 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 256883-258760 bp Gene: pfam01881:cas6 Type: other Location: 258766-259560 bp Gene: pfam13280:WYL Type: other Location: 259581-260495 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 249053-250930 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: LJCM01000004.1 Clostridioides difficile strain LIBA5757 .11940_2_56.4, whole genome shotgun sequence

⇒Summary: seq-len = 282270 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 148808-149229 bp Zoom in on locus 1 x7 CRISPR array Location: 148808-149229 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 148808-149229 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 148808-149229 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: LJCM01000011.1 Clostridioides difficile strain LIBA5757 .11940_2_56.11, whole genome shotgun sequence

⇒Summary: seq-len = 138372 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24752-24976 bp 2 Locus 2: 106507-107198 bp Zoom in on locus 1 x4 Zoom in on locus 2 x11 CRISPR array Location: 24752-24976 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 24752-24976 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 106507-107198 bp Num of repeats: 11 Spacers: s4-s13 CRISPR array Location: 106507-107198 bp Num of repeats: 11 Spacers: s4-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24752-24976 bp]: array | spacers
           [Locus range 106507-107198 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: LJCM01000002.1 Clostridioides difficile strain LIBA5757 .11940_2_56.2, whole genome shotgun sequence

⇒Summary: seq-len = 463336 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80584-80677 bp 2 Locus 2: 288852-289344 bp Zoom in on locus 1 x2 Zoom in on locus 2 x8 CRISPR array Location: 80584-80677 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 80584-80677 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 288852-289344 bp Num of repeats: 8 Spacers: s2-s8 CRISPR array Location: 288852-289344 bp Num of repeats: 8 Spacers: s2-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 80584-80677 bp]: array | spacers
           [Locus range 288852-289344 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)