CRISPRone

CRISPRone report for GCA_002964255.1_ASM296425v1

♦ Seq 1: PUEX01000031.1 Pseudomonas aeruginosa strain 8489 NODE_31_length_67341_cov_48.1191, whole genome shotgun sequence

⇒Summary: seq-len = 67341 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36362-48121 bp Zoom in on locus 1 x21 x33 CRISPR array Location: 36362-37590 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 36362-37590 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09739:cas6f Type: other Location: 37773-38336 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38340-39368 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39379-40362 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40349-41653 bp Gene: COG1203:cas3 Type: Type-I Location: 41711-44941 bp Gene: cd09718:cas1 Type: universal Location: 44938-45912 bp CRISPR array Location: 46174-48121 bp Num of repeats: 33 Spacers: s21-s52 CRISPR array Location: 46174-48121 bp Num of repeats: 33 Spacers: s21-s52 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36362-37590 bp]: array | spacers
           [Locus range 46174-48121 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: PUEX01000022.1 Pseudomonas aeruginosa strain 8489 NODE_22_length_116033_cov_51.7639, whole genome shotgun sequence

⇒Summary: seq-len = 116033 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73120-83705 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 73120-73989 bp Gene: pfam00078:RT Type: other Location: 78898-80166 bp Gene: unk Type: unknown Location: 80316-80714 bp Gene: unk Type: unknown Location: 80898-81077 bp Gene: cls000170:cas4 Type: Type-I Location: 82161-83705 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)