CRISPRone

CRISPRone report for GCA_002964295.1_ASM296429v1

♦ Seq 1: PUEW01000040.1 Pseudomonas aeruginosa strain 8488 NODE_40_length_48208_cov_28.0639, whole genome shotgun sequence

⇒Summary: seq-len = 48208 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38060-48077 bp Zoom in on locus 1 x9 x16 CRISPR array Location: 38060-38567 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 38060-38567 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09739:cas6f Type: other Location: 38750-39313 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39317-40345 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40356-41339 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41326-42630 bp Gene: COG1203:cas3 Type: Type-I Location: 42688-45918 bp Gene: cd09718:cas1 Type: universal Location: 45915-46889 bp CRISPR array Location: 47150-48077 bp Num of repeats: 16 Spacers: s9-s23 CRISPR array Location: 47150-48077 bp Num of repeats: 16 Spacers: s9-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38060-38567 bp]: array | spacers
           [Locus range 47150-48077 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: PUEW01000035.1 Pseudomonas aeruginosa strain 8488 NODE_35_length_64014_cov_27.5925, whole genome shotgun sequence

⇒Summary: seq-len = 64014 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62594-63883 bp Zoom in on locus 1 x22 CRISPR array Location: 62594-63883 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 62594-63883 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62594-63883 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)