CRISPRone

CRISPRone report for GCA_002968755.1_ASM296875v1

♦ Seq 1: CP027169.1 Pseudomonas aeruginosa strain AR_0356 chromosome, complete genome

⇒Summary: seq-len = 6586916 bp; # of CRISPR array = 3; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 926107-926254 bp 2 Locus 2: 2384529-2385099 bp 3 Locus 3: 4149047-4149375 bp 4 Locus 4: 5189990-5192192 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 Zoom in on locus 3 x6 Zoom in on locus 4 CRISPR array Location: 926107-926254 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 926107-926254 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2384529-2385099 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 2384529-2385099 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 4149047-4149375 bp Num of repeats: 6 Spacers: s12-s16 CRISPR array Location: 4149047-4149375 bp Num of repeats: 6 Spacers: s12-s16 Gene: COG2378:WYL Type: other Location: 5189990-5190961 bp Gene: unk Type: unknown Location: 5191071-5191757 bp Gene: cd09693:cas5 Type: Type-I Location: 5191785-5192192 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 926107-926254 bp]: array | spacers
           [Locus range 2384529-2385099 bp]: array | spacers
           [Locus range 4149047-4149375 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CP027167.1 Pseudomonas aeruginosa strain AR_0356 plasmid unnamed3, complete sequence

⇒Summary: seq-len = 165365 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39520-45791 bp Zoom in on locus 1 x9 Gene: pfam03787:csm3gr7 Type: Type-III Location: 39520-40620 bp Gene: pfam09618:cas6f Type: Subtype-I-F Location: 40608-41162 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 41176-43389 bp Gene: mkCas0093:csf3gr5 Type: Subtype-IV-A Location: 43389-44069 bp Gene: COG1518:cas1 Type: universal Location: 44074-44943 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 44924-45259 bp CRISPR array Location: 45283-45791 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 45283-45791 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45283-45791 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)