CRISPRone

CRISPRone report for GCA_002980385.1_ASM298038v1

♦ Seq 1: PPDT01000028.1 Pseudomonas aeruginosa strain WCHPA075025, whole genome shotgun sequence

⇒Summary: seq-len = 47768 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38001-47763 bp Zoom in on locus 1 x15 x2 x3 CRISPR array Location: 38001-38869 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 38001-38869 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 39052-39615 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39619-40647 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40658-41641 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41628-42932 bp Gene: COG1203:cas3 Type: Type-I Location: 42990-46220 bp Gene: cd09718:cas1 Type: universal Location: 46217-47191 bp CRISPR array Location: 47456-47543 bp Num of repeats: 2 Spacers: s15-s15 CRISPR array Location: 47456-47543 bp Num of repeats: 2 Spacers: s15-s15 CRISPR array Location: 47616-47763 bp Num of repeats: 3 Spacers: s16-s17 CRISPR array Location: 47616-47763 bp Num of repeats: 3 Spacers: s16-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38001-38869 bp]: array | spacers
           [Locus range 47456-47543 bp]: array | spacers
           [Locus range 47616-47763 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: PPDT01000006.1 Pseudomonas aeruginosa strain WCHPA075025, whole genome shotgun sequence

⇒Summary: seq-len = 337618 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 336386-337613 bp Zoom in on locus 1 x21 CRISPR array Location: 336386-337613 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 336386-337613 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 336386-337613 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)