CRISPRone

CRISPRone report for GCA_003000655.1_ASM300065v1

♦ Seq 1: PSQQ01000001.1 Pseudomonas aeruginosa strain AR_0355 AR0355.contig.0_1, whole genome shotgun sequence

⇒Summary: seq-len = 7172470 bp; # of CRISPR array = 3; # of cas gene = 10  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1978401-1988262 bp 2 Locus 2: 3923296-3923624 bp 3 Locus 3: 5386371-5397040 bp Zoom in on locus 1 Zoom in on locus 2 x6 Zoom in on locus 3 x15 x21 Gene: COG1199:DinG Type: Subtype-IV-A Location: 1978401-1980767 bp Gene: unk Type: unknown Location: 1981160-1981738 bp Gene: unk Type: unknown Location: 1981882-1982037 bp Gene: pfam13280:WYL Type: other Location: 1982291-1983166 bp Gene: unk Type: unknown Location: 1983181-1983714 bp Gene: unk Type: unknown Location: 1984024-1984203 bp Gene: pfam13280:WYL Type: other Location: 1985475-1986491 bp Gene: mkCas0115:csx3 Type: other Location: 1986652-1988262 bp CRISPR array Location: 3923296-3923624 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 3923296-3923624 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5386371-5387239 bp Num of repeats: 15 Spacers: s6-s19 CRISPR array Location: 5386371-5387239 bp Num of repeats: 15 Spacers: s6-s19 Gene: cd09739:cas6f Type: other Location: 5387422-5387985 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 5387989-5389017 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5389028-5390011 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5389998-5391302 bp Gene: COG1203:cas3 Type: Type-I Location: 5391360-5394590 bp Gene: cd09718:cas1 Type: universal Location: 5394587-5395561 bp CRISPR array Location: 5395813-5397040 bp Num of repeats: 21 Spacers: s20-s39 CRISPR array Location: 5395813-5397040 bp Num of repeats: 21 Spacers: s20-s39 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3923296-3923624 bp]: array | spacers
           [Locus range 5386371-5387239 bp]: array | spacers
           [Locus range 5395813-5397040 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)