CRISPRone

CRISPRone report for GCA_003000755.1_ASM300075v1

♦ Seq 1: PSQR01000004.1 Pseudomonas aeruginosa strain AR_0358 AR0358.contig.3_1, whole genome shotgun sequence

⇒Summary: seq-len = 1751566 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 173800-184385 bp Zoom in on locus 1 Gene: cls000170:cas4 Type: Type-I Location: 173800-175344 bp Gene: unk Type: unknown Location: 176428-176607 bp Gene: pfam00078:RT Type: other Location: 177339-178607 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 183516-184385 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: PSQR01000005.1 Pseudomonas aeruginosa strain AR_0358 AR0358.contig.4_1, whole genome shotgun sequence

⇒Summary: seq-len = 5519119 bp; # of CRISPR array = 2; # of cas gene = 11  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 212196-222707 bp 2 Locus 2: 2753100-2759888 bp Zoom in on locus 1 x13 x9 Zoom in on locus 2 CRISPR array Location: 212196-212957 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 212196-212957 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 213022-213321 bp Gene: cd09719:cas1 Type: universal Location: 213318-214208 bp Gene: pfam08798:cas6e Type: other Location: 214235-214774 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 214821-215483 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 215485-216627 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 216637-217167 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 217164-218732 bp Gene: cd09641:cas3HD Type: Type-I Location: 218735-221416 bp CRISPR array Location: 222190-222707 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 222190-222707 bp Num of repeats: 9 Spacers: s13-s20 Gene: cd09696:cas3 Type: Subtype-I-U Location: 2753100-2756321 bp Gene: pfam13280:WYL Type: other Location: 2756334-2757242 bp Gene: unk Type: unknown Location: 2757522-2758412 bp Gene: unk Type: unknown Location: 2758547-2758864 bp Gene: mkCas0115:csx3 Type: other Location: 2758857-2759888 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 212196-212957 bp]: array | spacers
           [Locus range 222190-222707 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)