CRISPRone

CRISPRone report for GCA_003013435.1_ASM301343v1

♦ Seq 1: PXZF01000017.1 Clostridioides difficile strain HS-FS_0042_01 CD-HSFS000042-HSFS000042I01-CL-USA-2016-017-PK_127, whole genome shotgun sequence

⇒Summary: seq-len = 68575 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63753-64836 bp Zoom in on locus 1 x17 CRISPR array Location: 63753-64836 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 63753-64836 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63753-64836 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: PXZF01000024.1 Clostridioides difficile strain HS-FS_0042_01 CD-HSFS000042-HSFS000042I01-CL-USA-2016-017-PK_134, whole genome shotgun sequence

⇒Summary: seq-len = 19726 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6926-11594 bp Zoom in on locus 1 x6 x4 x11 CRISPR array Location: 6926-7285 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 6926-7285 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 8889-9113 bp Num of repeats: 4 Spacers: s6-s8 CRISPR array Location: 8889-9113 bp Num of repeats: 4 Spacers: s6-s8 CRISPR array Location: 10906-11594 bp Num of repeats: 11 Spacers: s9-s18 CRISPR array Location: 10906-11594 bp Num of repeats: 11 Spacers: s9-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6926-7285 bp]: array | spacers
           [Locus range 8889-9113 bp]: array | spacers
           [Locus range 10906-11594 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: PXZF01000004.1 Clostridioides difficile strain HS-FS_0042_01 CD-HSFS000042-HSFS000042I01-CL-USA-2016-017-PK_114, whole genome shotgun sequence

⇒Summary: seq-len = 311213 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32974-44045 bp 2 Locus 2: 266261-266354 bp Zoom in on locus 1 x24 Zoom in on locus 2 x2 CRISPR array Location: 32974-34507 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 32974-34507 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09725:cas2 Type: universal Location: 34691-34957 bp Gene: cd09722:cas1 Type: universal Location: 34960-35940 bp Gene: pfam01930:cas4 Type: Type-I Location: 35943-36461 bp Gene: COG1203:cas3 Type: Type-I Location: 36509-38830 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 38841-39542 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 39544-40458 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 40460-42310 bp Gene: pfam01881:cas6 Type: other Location: 42316-43110 bp Gene: pfam13280:WYL Type: other Location: 43131-44045 bp CRISPR array Location: 266261-266354 bp Num of repeats: 2 Spacers: s24-s24 CRISPR array Location: 266261-266354 bp Num of repeats: 2 Spacers: s24-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 32974-34507 bp]: array | spacers
           [Locus range 266261-266354 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: PXZF01000001.1 Clostridioides difficile strain HS-FS_0042_01 CD-HSFS000042-HSFS000042I01-CL-USA-2016-017-PK_111, whole genome shotgun sequence

⇒Summary: seq-len = 577717 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 287595-288211 bp 2 Locus 2: 451483-459804 bp 3 Locus 3: 533087-533444 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 287595-288211 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 287595-288211 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 451483-453891 bp Gene: cd09693:cas5 Type: Type-I Location: 453918-454715 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 454731-455747 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 455767-457242 bp Gene: pfam01881:cas6 Type: other Location: 457247-457984 bp Gene: unk Type: unknown Location: 458085-458261 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 458695-459804 bp CRISPR array Location: 533087-533444 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 533087-533444 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 287595-288211 bp]: array | spacers
           [Locus range 533087-533444 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: PXZF01000003.1 Clostridioides difficile strain HS-FS_0042_01 CD-HSFS000042-HSFS000042I01-CL-USA-2016-017-PK_113, whole genome shotgun sequence

⇒Summary: seq-len = 330309 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 64404-65160 bp 2 Locus 2: 204477-205035 bp Zoom in on locus 1 x12 Zoom in on locus 2 x9 CRISPR array Location: 64404-65160 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 64404-65160 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 204477-205035 bp Num of repeats: 9 Spacers: s12-s19 CRISPR array Location: 204477-205035 bp Num of repeats: 9 Spacers: s12-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 64404-65160 bp]: array | spacers
           [Locus range 204477-205035 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: PXZF01000002.1 Clostridioides difficile strain HS-FS_0042_01 CD-HSFS000042-HSFS000042I01-CL-USA-2016-017-PK_112, whole genome shotgun sequence

⇒Summary: seq-len = 342570 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 93339-93500 bp Zoom in on locus 1 x3 CRISPR array Location: 93339-93500 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 93339-93500 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 93339-93500 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)